genome.fa.s5783.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005783.1 Hibiscus syriacus cultivar Beakdansim tig00013544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90895

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1428--1532	31	3.4	31	84	5	122	27	11	21	39	1.88
1435--1513	31	2.5	32	91	6	133	30	10	18	40	1.84
2470--2695	36	6.4	36	79	10	234	27	18	13	40	1.88
2411--2659	101	2.5	101	83	2	293	30	18	12	38	1.88
2490--2749	138	1.9	138	89	0	403	27	18	13	40	1.88
2653--2811	65	2.4	67	88	3	223	33	21	8	36	1.83
3518--3866	106	3.3	106	86	5	486	33	24	18	22	1.96
4805--4835	2	15.5	2	93	0	53	51	0	0	48	1.00
4821--4926	42	2.6	39	80	12	122	31	1	1	65	1.14
4882--4998	8	14.1	8	70	13	76	21	1	0	76	0.94
4853--5009	4	39.8	4	70	15	69	23	1	1	72	1.04
4823--4942	36	3.1	36	79	17	109	30	2	1	65	1.15
4815--4994	48	3.9	46	76	16	151	27	2	1	68	1.10
4821--4985	38	4.1	40	76	15	128	27	2	1	68	1.12
4886--5065	18	10.3	17	65	17	75	19	4	1	74	1.07
4885--5009	46	2.5	50	75	20	136	20	1	1	76	0.96
6248--6275	2	14.0	2	100	0	56	0	0	50	50	1.00
8599--8629	2	15.5	2	93	0	53	0	45	3	51	1.17
9592--9653	31	2.0	30	87	9	90	30	4	4	59	1.39
14944--15009	30	2.2	30	81	8	80	36	0	13	50	1.42
17151--17207	29	1.9	30	86	10	82	50	0	7	42	1.29
18252--18297	21	2.2	21	84	0	56	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23539--23591	20	2.7	20	78	0	61	37	13	15	33	1.86
35337--35470	40	3.3	41	74	9	105	36	16	17	29	1.92
35798--35847	23	2.3	22	93	6	84	56	20	10	14	1.66
36361--36860	82	6.1	81	75	9	406	36	17	16	30	1.92
36467--36715	128	1.9	128	82	4	306	36	15	16	31	1.90
36361--36860	41	12.1	40	77	8	362	36	17	16	30	1.92
37304--37341	19	2.1	18	90	5	58	44	0	0	55	0.99
38556--38786	41	5.5	41	75	9	214	34	16	17	31	1.93
38758--38813	27	2.1	27	89	0	85	28	10	23	37	1.88
38806--38989	40	4.6	39	80	9	160	35	19	15	29	1.93
38796--38989	79	2.4	82	81	6	211	35	19	15	29	1.93
39434--39471	19	2.1	18	90	5	58	44	0	0	55	0.99
47441--47485	23	2.0	23	86	4	65	42	0	2	55	1.12
47437--47497	20	3.0	21	80	15	65	44	0	1	54	1.10
52634--52687	21	2.6	20	85	8	72	31	9	14	44	1.77
54912--54962	16	3.2	16	94	0	84	5	39	11	43	1.66
55047--55197	78	1.9	78	90	0	239	38	13	17	31	1.88
59674--59753	42	1.9	42	92	0	133	32	30	11	26	1.91
61271--61454	59	3.2	59	90	1	291	45	17	7	29	1.75
62945--63071	59	2.2	59	89	0	200	30	3	18	46	1.67
70878--70922	21	2.3	19	92	7	72	51	0	0	48	1.00
70878--70922	19	2.2	21	88	7	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71377--71403	2	13.5	2	100	0	54	0	48	0	51	1.00
72542--72580	16	2.4	16	82	0	51	10	7	23	58	1.56
75682--75813	60	2.2	59	83	5	158	33	17	19	29	1.95
76334--76373	16	2.5	16	100	0	80	72	0	17	10	1.11
76407--76702	146	2.0	146	84	0	385	33	20	26	19	1.97
76964--77035	29	2.4	29	78	15	76	16	11	11	61	1.57
85234--85274	20	2.0	20	100	0	82	14	41	29	14	1.86
86213--86260	24	2.0	24	100	0	96	33	29	16	20	1.95
87541--87580	19	2.1	19	95	0	71	20	37	30	12	1.89
89966--90486	254	2.1	252	91	2	841	35	22	17	24	1.95
90399--90717	119	2.7	119	81	6	349	31	23	18	25	1.97
90771--90887	36	3.3	36	92	1	191	26	20	13	39	1.90

Tables:   1

The End!