genome.fa.s5784.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005784.1 Hibiscus syriacus cultivar Beakdansim tig00013552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148243

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2189--2241	22	2.2	25	90	9	85	11	16	9	62	1.54
5281--5333	22	2.2	25	90	9	85	11	18	9	60	1.57
8379--8422	22	2.0	22	86	4	61	11	13	11	63	1.52
10202--10279	24	3.3	23	70	13	59	35	17	17	28	1.94
11453--11505	22	2.2	25	90	9	85	11	18	9	60	1.57
14532--14575	22	2.0	22	86	4	61	15	15	9	59	1.61
17593--17645	22	2.2	25	87	9	76	13	18	7	60	1.56
20710--20762	22	2.2	25	87	9	76	13	18	7	60	1.56
23830--23882	22	2.2	25	87	9	76	13	18	7	60	1.56
26944--26996	22	2.2	25	87	9	76	13	18	7	60	1.56
29914--29966	22	2.2	25	83	9	67	9	18	9	62	1.52
36438--36484	21	2.2	21	100	0	94	42	12	10	34	1.78
37213--37263	17	3.0	17	85	0	75	43	3	13	39	1.63
37360--37420	17	3.4	17	69	20	52	42	13	13	31	1.82
37376--37474	20	5.2	20	65	18	77	46	14	9	30	1.75
37360--37482	37	3.3	37	95	0	219	43	13	11	30	1.80
51842--51892	24	2.1	24	89	7	77	58	11	17	11	1.62
78796--78848	24	2.2	24	86	3	72	11	18	15	54	1.70
87116--87192	18	4.5	18	66	18	56	76	3	14	5	1.10
91142--91205	32	2.0	32	100	0	128	21	15	15	46	1.83
92391--92520	61	2.1	61	95	0	233	26	13	3	57	1.50
92939--92983	21	2.2	21	84	11	58	22	15	13	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98937--99014	38	2.1	38	95	0	138	28	26	11	33	1.91
105404--105437	17	2.1	16	88	5	50	64	11	14	8	1.49
107596--107642	24	2.0	24	87	4	69	55	17	17	10	1.69
126064--126103	21	1.9	21	94	0	71	57	0	25	17	1.40
126200--126228	11	2.6	11	100	0	58	37	0	27	34	1.57
126253--126364	35	3.2	35	82	2	127	30	4	36	28	1.77
131316--131345	15	1.9	16	93	6	53	70	0	16	13	1.18
131932--132042	35	3.2	35	83	2	134	32	2	36	28	1.72
133749--133781	2	16.5	2	100	0	66	51	0	0	48	1.00
134480--134592	46	2.4	46	85	2	136	37	22	25	15	1.93
134501--134608	46	2.3	46	87	0	144	36	24	23	16	1.94
148181--148228	23	2.1	23	100	0	96	45	0	22	31	1.53

Tables:   1

The End!