Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005786.1 Hibiscus syriacus cultivar Beakdansim tig00013558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46220

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5488--5517
5
6.2
5
96
3
53
0
20
0
80
0.72
5516--5563
22
2.3
21
92
7
80
10
12
12
64
1.50
8155--8223
33
2.0
35
86
8
97
18
24
27
28
1.98
8756--8959
31
6.6
31
95
0
363
19
19
21
39
1.92
11212--11277
2
33.0
2
100
0
132
50
0
0
50
1.00
12585--12648
20
3.5
19
67
20
55
14
32
28
25
1.94
12580--12647
35
1.9
35
93
0
118
17
30
27
23
1.97
13212--13336
31
4.0
31
87
2
171
21
17
21
39
1.93
15368--15477
47
2.4
45
86
7
150
34
22
4
38
1.75
15474--15511
20
1.9
20
88
0
58
57
18
5
18
1.58
16388--16415
11
2.5
11
100
0
56
50
35
0
14
1.43
21651--21694
16
2.8
15
80
10
52
54
0
18
27
1.44
25697--25736
15
2.7
14
85
11
53
0
12
2
85
0.71
25699--25744
20
2.2
20
92
3
74
0
8
4
86
0.68
25699--25749
10
5.0
10
79
13
50
0
7
7
84
0.78
26130--26187
13
4.7
13
68
12
50
29
1
41
27
1.66
26093--26188
36
2.7
35
85
3
120
34
2
36
27
1.69
34506--34545
13
2.9
14
85
7
64
27
32
22
17
1.96
35054--35195
45
3.2
45
87
5
191
30
21
6
41
1.78
40064--40104
17
2.4
17
87
4
55
34
12
9
43
1.75
40074--40155
17
4.8
17
71
11
69
28
12
12
47
1.76
40074--40155
34
2.4
34
82
11
114
28
12
12
47
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40144--40224
17
4.8
17
74
8
60
37
14
4
43
1.68
40614--40668
25
2.2
25
93
0
92
34
20
20
25
1.96
44771--44809
18
2.1
19
86
13
55
58
10
0
30
1.31

Tables:   1

The End!