Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005787.1 Hibiscus syriacus cultivar Beakdansim tig00013559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54053

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9809--9876
18
3.7
18
80
17
70
44
1
1
52
1.19
9809--9876
8
7.6
8
74
20
55
44
1
1
52
1.19
11301--11437
60
2.3
60
81
5
161
30
17
16
35
1.92
13510--13548
2
19.5
2
100
0
78
51
0
0
48
1.00
14450--14490
21
2.0
21
85
0
55
19
21
31
26
1.97
16602--16681
39
2.1
37
81
6
90
35
23
20
21
1.96
20834--20949
60
1.9
60
85
0
160
34
16
15
33
1.90
21905--21944
8
5.1
8
84
6
55
57
0
0
42
0.98
27324--27355
5
6.4
5
92
0
55
0
43
0
56
0.99
29976--30050
35
2.1
35
87
0
105
33
13
36
17
1.88
30104--30203
2
54.0
2
69
15
72
51
0
0
49
1.00
33045--33158
60
1.9
60
83
3
149
35
9
14
39
1.79
33046--33173
60
2.1
60
81
2
141
33
10
17
38
1.84
32355--35133
463
6.0
463
94
1
4848
35
13
13
37
1.84
33962--34090
60
2.2
60
82
2
152
33
10
17
38
1.84
32355--35133
917
3.0
926
94
1
4904
35
13
13
37
1.84
43520--43572
24
2.2
24
86
3
81
20
16
11
50
1.76
44838--44906
32
2.2
32
86
0
93
28
14
20
36
1.92
47092--47264
45
3.8
45
94
0
292
37
15
20
26
1.92
51158--51218
28
2.1
29
90
3
97
18
31
32
18
1.94
51278--51349
20
3.3
20
67
29
58
18
8
47
26
1.76
51278--51369
45
2.0
46
93
2
159
18
8
46
26
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51860--51908
21
2.3
21
82
13
64
28
0
16
55
1.42
51866--51922
29
2.0
28
83
13
71
26
0
14
59
1.35
51884--51944
26
2.2
29
88
11
92
31
0
11
57
1.34
52411--52467
16
3.4
16
70
13
51
36
0
12
50
1.40
52727--52785
26
2.3
25
75
18
66
47
8
3
40
1.51

Tables:   1

The End!