genome.fa.s5790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005790.1 Hibiscus syriacus cultivar Beakdansim tig00013569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74205

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340--374	18	1.9	18	94	0	61	37	11	5	45	1.64
4940--4982	18	2.3	19	80	15	54	79	0	16	4	0.90
4940--4981	13	3.3	13	80	3	50	80	0	14	4	0.86
11218--11268	24	2.2	23	82	10	59	41	5	9	43	1.62
14534--14645	36	3.1	36	89	1	172	30	35	3	30	1.75
14796--14835	20	2.0	20	100	0	80	10	25	0	65	1.24
15107--15153	14	3.1	15	75	12	51	72	6	19	2	1.17
19069--19180	36	3.1	36	92	1	181	30	36	3	29	1.74
19331--19370	20	2.0	20	100	0	80	10	25	0	65	1.24
25565--25614	19	2.5	20	84	9	59	42	6	14	38	1.70
29496--29545	19	2.5	20	93	3	84	46	6	14	34	1.69
33504--33540	16	2.2	17	95	4	67	10	24	45	18	1.81
33514--33557	12	3.8	12	79	11	56	11	25	45	18	1.82
33497--33562	22	3.0	22	88	6	89	13	24	43	18	1.86
33559--33628	9	7.3	9	76	12	59	30	28	27	14	1.95
33559--33608	19	2.7	18	87	9	73	28	32	28	12	1.92
33591--33629	21	1.9	21	89	5	62	33	23	25	17	1.96
40809--40846	16	2.3	17	95	4	69	13	23	44	18	1.85
40789--40819	7	4.4	7	100	0	62	25	29	29	16	1.96
40842--40920	10	8.3	9	80	6	77	27	30	27	13	1.95
40883--40932	20	2.4	22	87	12	79	30	24	28	18	1.97
40867--40938	20	3.7	19	78	10	74	30	27	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40867--40938	9	7.4	9	79	11	63	30	27	26	15	1.96
46972--47332	177	2.0	177	91	0	587	29	16	20	32	1.95
48900--48941	21	2.0	21	100	0	84	52	4	23	19	1.65
50087--50135	18	2.7	18	93	0	80	32	4	14	48	1.62
54427--54469	13	3.3	13	84	9	52	79	4	0	16	0.90
64915--65030	35	3.3	35	82	3	126	33	4	33	28	1.77

Tables:   1

The End!