genome.fa.s5791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005791.1 Hibiscus syriacus cultivar Beakdansim tig00013578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52236

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2780--2940	85	1.9	86	88	2	243	43	11	13	32	1.79
2962--3413	197	2.3	197	79	6	450	31	14	14	39	1.86
6746--6792	21	2.2	22	84	3	60	44	10	14	29	1.79
6547--7453	201	4.5	197	83	6	1024	31	13	16	38	1.88
6552--7353	393	2.0	389	80	6	897	31	13	16	38	1.88
8153--8201	19	2.7	17	84	9	53	26	18	30	24	1.98
8170--8276	45	2.4	42	79	13	124	30	15	23	29	1.96
8260--8310	19	2.7	19	79	8	61	31	15	29	23	1.95
8218--8342	64	1.9	64	85	4	171	29	16	21	32	1.95
8324--8363	21	1.9	21	89	0	62	22	12	30	35	1.91
10911--10990	24	3.5	23	73	14	76	27	21	26	25	1.99
16788--16950	64	2.6	63	81	5	195	28	15	25	30	1.96
16897--16947	19	2.7	19	85	8	70	29	15	31	23	1.95
16961--17000	21	1.9	21	94	0	71	22	15	30	32	1.94
18395--18429	15	2.3	15	100	0	70	31	0	51	17	1.45
18852--19984	198	5.7	198	92	2	1774	32	15	16	36	1.90
18852--19984	395	2.8	396	91	3	1794	32	15	16	36	1.90
20262--20311	19	2.6	19	93	0	82	58	10	2	30	1.42
21454--21489	17	2.1	17	100	0	72	30	11	8	50	1.67
22461--22516	24	2.4	24	77	14	64	51	8	0	39	1.33
25550--25659	47	2.4	46	86	4	143	40	9	20	30	1.83
32691--32800	47	2.4	46	84	4	134	40	9	18	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34404--35368	182	5.3	182	93	0	1507	27	17	13	41	1.86
34805--34851	20	2.3	20	78	7	60	14	21	14	48	1.80
34987--35033	20	2.3	20	78	7	60	14	21	14	48	1.80
36043--36076	2	17.0	2	100	0	68	50	0	0	50	1.00
36362--36689	155	2.1	156	84	3	421	50	6	15	28	1.69
40631--40867	30	7.9	30	74	8	151	57	11	13	17	1.64
40724--40839	29	4.0	29	80	2	106	56	9	15	18	1.66
42970--43035	30	2.2	30	86	0	87	13	30	21	34	1.92
43207--43300	30	3.1	30	96	0	179	63	0	3	32	1.10
43200--43286	17	5.6	17	66	25	66	60	0	3	35	1.13
51671--51735	32	2.0	32	85	5	87	50	1	1	46	1.20

Tables:   1

The End!