Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005793.1 Hibiscus syriacus cultivar Beakdansim tig00013581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56548

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2872--3334
231
2.0
230
94
0
809
35
9
25
28
1.88
4187--4270
23
3.7
23
78
0
87
17
23
25
33
1.97
4187--4283
46
2.1
46
86
0
131
19
23
23
32
1.97
4218--4285
23
3.0
23
75
0
73
20
23
23
32
1.98
4452--4511
31
1.9
31
93
0
102
43
5
21
30
1.74
4444--4515
31
2.6
25
71
22
63
43
4
20
31
1.71
4500--4540
18
2.3
18
91
0
64
36
2
21
39
1.67
5447--5480
2
17.0
2
100
0
68
50
0
0
50
1.00
6529--6574
21
2.2
21
96
0
83
19
28
28
23
1.98
6660--7017
186
1.9
186
95
0
644
44
9
3
42
1.55
8754--9073
139
2.4
133
84
7
389
29
12
16
41
1.85
10715--10755
15
2.9
14
82
7
55
46
0
2
51
1.14
34064--34162
21
4.8
21
69
12
62
51
8
1
39
1.38
34075--34132
29
2.0
30
93
3
100
50
8
1
39
1.43
34032--34152
31
3.9
31
81
9
140
49
9
2
38
1.50
35957--35990
18
1.9
18
88
5
52
29
32
23
14
1.94
44841--44879
2
19.5
2
100
0
78
48
0
0
51
1.00
45335--45374
14
2.9
14
85
3
55
32
0
0
67
0.91
45975--46066
48
1.9
47
97
2
175
32
10
8
47
1.69
46537--46593
23
2.5
22
77
11
60
35
17
5
42
1.72
46664--46709
24
1.9
24
82
8
58
32
0
0
67
0.91
46882--46953
21
3.0
24
86
11
87
43
5
0
51
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48150--48181
3
10.3
3
93
6
55
37
0
0
62
0.95
54460--54494
17
2.1
17
89
10
54
42
0
0
57
0.99

Tables:   1

The End!