genome.fa.s5796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005796.1 Hibiscus syriacus cultivar Beakdansim tig00013586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92566

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11608--11663	25	2.2	26	78	15	64	44	0	3	51	1.18
11877--11917	23	1.9	22	85	14	59	63	4	2	29	1.28
12841--12886	23	1.9	23	86	8	65	50	0	0	50	1.00
19920--20005	32	2.7	31	87	3	127	43	8	10	38	1.69
20992--21166	36	4.9	36	87	4	214	17	24	24	33	1.96
20992--21166	72	2.4	71	86	4	244	17	24	24	33	1.96
21332--21423	44	2.1	44	97	0	175	31	21	22	23	1.98
22870--22961	21	4.4	21	77	13	109	16	19	27	36	1.93
22891--22972	41	2.0	41	100	0	164	14	21	24	39	1.91
22984--23080	39	2.4	40	83	8	126	19	18	23	38	1.93
23741--23813	20	3.6	20	70	17	69	38	26	21	13	1.91
23740--23880	41	3.4	40	82	8	160	34	26	18	21	1.96
23802--23876	21	3.6	21	100	0	150	29	29	16	25	1.96
24153--24230	38	2.1	38	97	0	147	42	10	26	20	1.84
29028--29130	51	2.0	51	98	0	197	17	18	24	39	1.91
31500--31544	21	2.1	21	83	0	54	48	6	13	31	1.68
33210--33236	14	1.9	14	100	0	54	51	22	14	11	1.73
38728--38801	29	2.6	29	97	2	141	18	21	16	43	1.88
39160--39383	64	3.5	62	81	7	218	27	17	20	33	1.95
39416--39471	21	2.7	21	94	0	103	26	23	23	26	2.00
39941--39966	3	8.7	3	100	0	52	65	0	34	0	0.93
43128--43201	29	2.6	29	97	2	141	18	21	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43560--43783	64	3.5	64	83	3	238	28	17	20	33	1.96
44320--44372	3	17.7	3	96	0	97	64	0	33	1	1.05
47043--47169	61	2.1	61	98	0	245	33	11	15	40	1.83
49101--49139	2	19.5	2	94	0	69	53	0	0	46	1.00
57080--58540	81	18.3	79	76	10	586	18	23	23	35	1.95
57085--58540	162	9.1	157	79	11	1027	18	23	23	35	1.95
57325--57908	75	7.5	75	83	7	688	17	23	22	35	1.95
57325--58498	150	7.4	150	79	11	982	17	24	22	35	1.95
57813--58010	102	1.9	102	100	0	396	17	25	20	36	1.94
57915--58498	75	7.5	74	84	7	605	17	24	22	35	1.95
57732--58085	177	2.0	177	98	0	690	17	25	21	35	1.95
57663--58160	252	2.0	252	96	0	926	17	24	21	36	1.94
57591--58226	327	1.9	327	94	1	1114	17	25	21	36	1.95
59056--59109	18	3.0	18	91	0	90	18	20	27	33	1.96
63575--63671	28	3.4	28	82	10	106	41	10	7	41	1.67
63575--63664	31	3.0	30	87	4	112	42	11	7	38	1.69
72593--72624	3	10.3	3	93	6	55	62	0	0	37	0.95
73335--73363	12	2.3	13	94	5	51	41	0	0	58	0.98
73840--73910	21	3.0	23	86	10	83	50	0	5	43	1.25
74164--74269	39	2.7	39	79	13	112	45	4	15	34	1.67
74671--74729	31	1.9	31	85	0	82	55	6	8	28	1.55
74726--74818	48	1.9	48	100	0	186	48	8	10	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75419--75456	14	2.8	14	84	4	51	68	0	0	31	0.90
75912--75946	2	17.5	2	100	0	70	51	0	0	48	1.00
84726--84759	18	1.9	18	88	5	52	14	23	32	29	1.94
86586--86705	31	3.9	31	78	11	131	37	2	10	50	1.50
89208--89233	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!