genome.fa.s5798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005798.1 Hibiscus syriacus cultivar Beakdansim tig00013593_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105980

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4114--4173	21	2.9	21	87	2	86	43	10	8	38	1.68
5266--5315	21	2.4	21	83	6	66	12	28	38	22	1.89
7167--7207	2	20.5	2	100	0	82	48	0	0	51	1.00
12157--12187	16	2.0	16	93	6	55	0	32	32	35	1.58
12358--12619	51	5.0	51	83	8	301	27	24	17	29	1.98
12357--12971	55	11.3	55	90	5	712	30	24	16	28	1.96
12971--13053	37	2.2	37	91	4	132	20	19	18	42	1.90
23969--24112	45	3.1	45	86	5	182	38	20	12	28	1.89
26985--27014	15	1.9	16	93	6	53	0	33	26	40	1.57
29252--29342	10	8.5	11	67	23	52	45	1	0	53	1.07
29274--29347	35	2.1	35	85	9	98	47	1	0	51	1.09
29305--29349	22	2.0	23	87	8	67	51	2	0	46	1.13
29978--30008	14	2.2	14	100	0	62	35	0	6	58	1.24
34342--34375	2	18.0	2	88	11	54	50	0	0	50	1.00
38684--39033	183	1.9	183	94	0	619	28	20	20	30	1.98
40292--40598	104	3.0	102	87	6	431	30	19	11	38	1.86
40485--40560	36	2.1	36	90	0	116	23	19	13	43	1.86
40589--40773	90	2.1	90	85	5	261	29	18	11	40	1.86
40715--40820	37	2.9	37	87	5	160	23	20	16	39	1.92
40887--41206	107	3.0	105	86	4	437	33	23	19	24	1.97
42876--42917	2	21.0	2	100	0	84	50	0	0	50	1.00
47498--47524	9	3.0	9	100	0	54	44	0	55	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50499--50545	24	2.0	24	82	0	58	36	4	4	55	1.39
51901--51938	20	1.9	20	94	0	67	26	21	18	34	1.96
52923--52964	14	3.0	14	96	0	75	50	16	0	33	1.46
55826--55867	20	2.2	19	86	4	57	64	0	0	35	0.94
55734--55969	120	2.0	116	80	4	267	44	8	8	38	1.63
57538--57596	3	19.0	3	82	6	73	62	0	0	37	0.95
57544--57596	18	2.9	18	94	2	88	62	0	0	37	0.96
57545--57602	18	3.2	18	87	7	82	60	0	0	39	0.97
57718--58225	45	11.2	45	94	1	874	35	20	23	20	1.96
58168--58356	76	2.5	77	92	0	308	34	20	20	25	1.96
59214--59268	22	2.5	22	93	0	101	40	14	10	34	1.81
67435--67476	20	2.2	19	86	4	57	64	2	0	33	1.07
69129--69210	3	26.7	3	80	4	92	58	0	0	41	0.98
69122--69217	18	5.6	17	83	9	101	56	0	1	42	1.06
80682--80718	3	12.0	3	88	5	56	0	29	0	70	0.88
81379--81516	39	3.8	38	85	9	164	46	2	7	43	1.45
81379--81636	36	7.4	36	72	20	160	44	1	6	46	1.41
81378--81627	133	1.9	131	80	12	294	45	2	7	45	1.43
81508--81625	35	3.3	35	80	13	132	43	1	6	48	1.39
81446--81580	62	2.2	62	84	6	177	45	1	7	45	1.40
81641--81669	9	3.2	9	100	0	58	20	0	0	79	0.74
81641--81678	18	2.1	18	85	9	51	18	2	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81651--82066	209	2.0	206	96	3	764	32	26	20	21	1.97
82978--83031	24	2.2	24	86	3	72	29	9	0	61	1.27
83074--83115	21	2.0	21	85	0	57	23	2	0	73	0.94
86712--86749	20	1.9	20	94	0	67	26	23	18	31	1.97
93480--93556	24	3.0	26	90	7	106	40	0	1	58	1.06
93480--93545	3	22.0	3	80	11	73	37	0	1	60	1.06
95104--95140	19	1.9	19	88	0	56	32	0	2	64	1.07
97881--97921	7	5.9	7	83	11	57	14	17	9	58	1.62
100464--100488	13	1.9	13	100	0	50	84	0	16	0	0.63
102860--103177	115	2.8	115	90	1	480	31	13	20	34	1.92
105052--105081	14	2.1	14	100	0	60	33	20	23	23	1.97
105424--105478	22	2.5	22	85	5	76	34	12	14	38	1.84

Tables:   1

The End!