Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005799.1 Hibiscus syriacus cultivar Beakdansim tig00013599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86951

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4097--4159
30
2.1
30
100
0
126
22
49
9
19
1.76
5596--5653
28
2.1
27
84
12
73
62
12
10
15
1.55
6130--6181
15
3.2
17
72
22
58
38
19
0
42
1.51
12370--12420
22
2.4
21
81
12
59
47
0
1
50
1.12
12545--12573
2
14.5
2
100
0
58
48
0
0
51
1.00
33869--33971
34
3.0
34
94
0
179
25
11
30
33
1.91
37101--37192
46
2.0
46
93
0
157
44
13
14
28
1.82
39923--40025
34
3.0
34
95
0
179
24
11
29
34
1.91
43136--43376
116
2.1
118
89
3
371
57
5
10
26
1.53
46606--46674
34
2.0
34
94
0
120
24
13
28
33
1.93
49119--49144
10
2.6
10
100
0
52
15
0
19
65
1.27
51806--51838
17
1.9
17
100
0
66
57
6
0
36
1.23
52716--52850
15
9.0
15
97
0
243
51
0
0
48
1.00
52852--52894
22
2.0
22
95
0
77
37
0
11
51
1.39
52874--53066
32
6.7
32
75
22
210
35
0
11
52
1.37
52828--53163
54
6.1
54
77
16
359
36
0
11
52
1.40
52828--53163
108
3.1
108
81
10
398
36
0
11
52
1.40
52960--53002
22
2.0
22
95
0
77
32
0
16
51
1.45
53050--53114
26
2.8
22
72
17
67
33
1
12
52
1.48
53206--53248
22
2.0
22
90
0
68
39
0
11
48
1.40
52928--53243
80
3.9
80
90
4
472
34
0
12
52
1.42
55487--55518
14
2.3
14
94
0
55
12
9
15
62
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56599--56624
4
6.5
4
100
0
52
23
0
0
76
0.78
60461--60506
24
1.9
24
86
0
65
26
32
21
19
1.97
61074--61098
8
3.1
8
100
0
50
76
0
0
24
0.80
61956--62000
23
1.9
24
86
4
65
33
8
2
55
1.43
73601--73656
25
2.2
26
78
15
64
44
0
3
51
1.18
73872--73913
23
2.0
22
86
13
61
61
4
2
30
1.29
74849--74894
23
1.9
23
86
8
65
50
0
0
50
1.00
81934--82019
32
2.7
31
87
3
127
43
8
10
38
1.69
83004--83178
36
4.9
36
87
4
214
17
24
24
33
1.96
83004--83178
72
2.4
71
86
4
244
17
24
24
33
1.96
83344--83435
44
2.1
44
97
0
175
31
21
22
23
1.98
84874--84965
21
4.4
21
77
13
109
16
19
27
36
1.93
84895--84976
41
2.0
41
100
0
164
14
21
24
39
1.91
84988--85083
40
2.4
40
86
6
133
19
18
23
37
1.94
85738--85810
20
3.6
20
70
17
69
38
26
21
13
1.91
85737--85876
41
3.4
40
83
4
147
33
26
18
21
1.96
85799--85872
21
3.6
21
98
1
141
28
29
16
25
1.97
86142--86219
38
2.1
38
97
0
147
42
10
26
20
1.84
86437--86495
29
2.0
29
100
0
118
33
11
20
33
1.89

Tables:   1

The End!