genome.fa.s5800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005800.1 Hibiscus syriacus cultivar Beakdansim tig00013602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109173

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904--943	21	1.9	21	89	0	62	35	30	12	22	1.91
969--1007	19	2.1	19	90	0	60	20	30	15	33	1.94
925--1049	64	1.9	64	85	4	171	32	21	16	29	1.95
987--1097	45	2.5	44	78	11	136	28	24	15	31	1.95
1066--1114	19	2.6	19	84	9	57	24	30	18	26	1.98
2463--2509	21	2.2	22	84	3	60	29	14	10	44	1.79
1808--2707	198	4.5	197	82	8	952	38	15	14	32	1.88
1808--2701	390	2.2	395	79	9	969	38	15	14	31	1.88
5723--5917	106	1.8	105	83	1	255	41	12	14	31	1.83
6294--6456	87	1.9	87	89	0	254	31	12	11	43	1.79
14422--14636	115	1.9	116	96	1	396	41	6	8	42	1.62
19242--19371	66	2.0	66	86	3	181	40	24	18	16	1.91
44024--44103	23	3.4	23	75	1	70	53	18	17	10	1.71
46825--46874	12	3.9	14	82	10	54	54	10	28	8	1.62
76683--76719	9	3.8	10	86	13	51	13	18	0	67	1.23
79412--79441	3	9.7	3	92	7	51	66	0	0	33	0.92
80370--80464	38	2.5	38	75	17	99	40	11	22	26	1.88
80641--80746	38	2.8	38	84	1	124	42	11	20	25	1.85
80657--80746	37	2.4	38	84	1	110	45	12	17	24	1.83
80660--80756	37	2.6	37	81	1	104	45	10	19	24	1.81
81891--81934	14	3.3	13	81	12	54	4	11	2	81	0.92
81891--81937	20	2.3	20	85	10	60	4	12	2	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84992--85088	22	4.4	22	88	5	124	31	17	22	27	1.97
84972--85088	44	2.7	43	84	5	155	31	17	22	28	1.97
84964--85088	66	2.0	62	84	9	162	31	16	23	28	1.96
85155--85220	27	2.4	27	100	0	132	36	16	16	30	1.91
85741--85777	17	2.2	17	86	13	51	54	0	8	37	1.30
85796--85828	17	1.9	17	93	0	57	33	0	0	66	0.92
86448--86646	83	2.4	82	89	0	299	31	18	17	33	1.94
86474--86604	41	3.2	42	68	22	114	30	20	16	32	1.94
87672--87701	13	2.3	13	100	0	60	16	16	0	66	1.25
90031--90315	43	6.6	43	80	4	272	24	24	18	32	1.97
90031--90315	85	3.3	84	78	7	279	24	24	18	32	1.97
92822--92881	29	2.1	29	87	0	84	23	0	21	55	1.44
92867--92909	19	2.2	20	80	12	54	30	2	13	53	1.53
94731--94773	22	2.0	22	90	0	68	13	13	23	48	1.79
94751--94788	15	2.4	16	82	4	51	10	13	31	44	1.77
102516--102558	22	2.0	22	95	0	77	51	11	0	37	1.39
102518--102566	22	2.2	22	85	3	62	55	12	0	32	1.37
102506--102966	54	8.6	54	83	10	313	51	12	0	35	1.44
102573--102620	22	2.1	22	88	3	69	56	14	0	29	1.39
102538--103096	134	4.1	139	84	8	712	52	13	0	34	1.44
102626--102700	22	3.2	23	71	17	73	54	16	0	29	1.42
102706--102754	22	2.2	22	85	3	62	55	12	0	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102761--102808	22	2.1	22	88	3	69	56	14	0	29	1.39
102506--103166	188	3.5	188	90	2	999	51	12	0	35	1.44
102860--102993	32	4.5	31	74	22	144	52	10	0	37	1.36
102892--102934	22	2.0	22	95	0	77	51	11	0	37	1.39
102894--102942	22	2.2	22	85	3	62	55	12	0	32	1.37
102937--102989	14	3.5	14	72	18	52	54	7	0	37	1.29
102914--103155	32	7.7	32	69	22	172	51	12	0	35	1.43
102978--103068	22	4.0	22	75	10	101	52	15	0	31	1.43
102946--103166	54	4.2	54	82	10	287	51	12	0	36	1.43
103125--103258	15	8.5	15	80	11	160	50	2	0	46	1.22
102713--103167	134	3.4	128	80	11	429	51	12	0	35	1.44
103154--103258	30	3.5	30	96	0	183	49	0	0	49	1.07
108255--108279	12	2.1	12	100	0	50	8	24	24	44	1.80

Tables:   1

The End!