genome.fa.s5801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005801.1 Hibiscus syriacus cultivar Beakdansim tig00013605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101330

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016--1082	21	3.0	23	86	6	93	20	26	25	26	1.99
6819--6866	22	2.2	21	82	7	60	56	4	20	18	1.58
10696--10731	18	2.0	18	94	0	63	47	0	0	52	1.00
18941--18981	12	3.4	12	93	6	66	43	0	0	56	0.99
21142--21277	61	2.2	60	82	6	159	41	5	19	33	1.73
38605--38633	13	2.2	13	100	0	58	68	0	13	17	1.20
45886--45950	21	3.1	21	73	2	60	21	21	21	35	1.96
45878--46009	69	1.9	69	100	0	264	21	21	21	35	1.96
45974--46049	21	3.6	21	68	19	68	22	18	23	35	1.96
45955--46075	42	2.9	42	84	7	149	23	19	20	37	1.94
46779--46911	21	6.4	21	78	10	157	39	19	18	22	1.92
46772--46898	40	3.1	40	88	4	191	37	18	18	24	1.94
46775--46890	42	2.8	42	92	2	173	38	20	18	22	1.93
47549--47606	23	2.6	23	94	5	102	39	3	12	44	1.58
47620--47654	13	2.8	13	91	4	54	57	0	0	42	0.99
50742--51471	126	5.8	126	97	0	1381	22	25	19	32	1.97
51872--51950	32	2.4	32	81	8	97	37	1	3	56	1.25
51850--51953	33	3.2	33	83	4	138	38	2	4	53	1.37
52474--52567	21	4.5	21	92	5	129	20	26	35	18	1.95
52571--52618	21	2.3	21	85	0	60	22	12	39	25	1.89
54336--54424	34	2.7	32	75	10	90	58	2	0	39	1.11
54339--54411	15	4.7	15	70	18	51	58	1	0	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55291--55364	20	3.7	20	98	0	139	39	9	25	25	1.86
56069--56119	19	2.6	20	90	3	77	43	23	17	15	1.88
56069--56326	20	12.6	20	75	9	117	39	18	22	19	1.93
56194--56324	40	3.2	39	81	5	145	35	16	25	22	1.95
56434--56466	6	5.5	6	100	0	66	33	51	15	0	1.43
57147--57219	6	12.2	6	100	0	146	0	16	49	34	1.46
57326--57663	20	16.6	20	80	6	169	17	23	19	38	1.93
57328--57559	40	5.7	40	87	4	293	18	26	18	36	1.94
57328--57538	60	3.5	60	85	3	287	18	26	18	36	1.94
57328--57559	83	2.8	83	88	1	335	18	26	18	36	1.94
57613--57663	19	2.6	20	90	3	77	15	17	23	43	1.88
61434--61459	2	13.0	2	100	0	52	50	0	0	50	1.00
61457--61499	21	2.0	21	95	0	77	37	6	27	27	1.83
62076--62115	21	1.9	21	90	10	64	55	0	2	42	1.13
64211--64237	2	13.5	2	100	0	54	51	0	0	48	1.00
66441--66475	12	2.9	12	100	0	70	51	0	0	48	1.00
66485--66636	39	3.8	40	72	16	104	38	7	12	41	1.71
67912--68112	60	3.3	60	85	0	267	30	15	17	35	1.92
68522--68797	135	2.0	132	95	4	390	42	13	10	32	1.79
68752--68846	47	2.0	46	97	2	181	53	8	14	23	1.68
72418--72474	26	2.1	26	83	6	69	28	3	0	68	1.06
76000--76032	17	2.0	17	94	5	59	54	0	6	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76588--76629	16	2.8	16	85	7	52	16	26	21	35	1.94
76545--76694	78	1.9	79	90	2	239	22	22	20	36	1.96
78841--78889	23	2.1	23	100	0	98	30	20	22	26	1.98
86393--86501	57	1.9	56	85	5	148	26	20	23	29	1.99
86393--86518	57	2.2	55	81	10	139	26	19	23	30	1.98
93093--93132	21	1.9	21	89	0	62	30	7	7	55	1.56
95039--95087	19	2.7	17	84	9	53	26	20	28	24	1.99
95059--95218	65	2.5	65	82	5	182	27	18	22	31	1.97
95059--95259	65	3.1	63	76	13	169	26	18	22	31	1.97
97694--97790	31	3.1	31	95	0	167	21	19	24	34	1.97
100684--100823	64	2.2	62	81	8	158	33	17	22	25	1.96
100811--100868	20	2.6	22	86	10	75	29	22	22	25	1.99

Tables:   1

The End!