genome.fa.s5803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005803.1 Hibiscus syriacus cultivar Beakdansim tig00013609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79336

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4146--4204	20	2.9	20	94	2	100	27	22	13	37	1.91
5479--5520	22	1.9	22	85	9	59	59	0	2	38	1.10
10690--10737	20	2.5	20	86	10	64	31	16	4	47	1.65
11256--11284	8	3.6	8	100	0	58	75	0	10	13	1.04
12572--12692	25	5.0	25	82	11	135	23	24	23	28	2.00
12587--12692	49	2.1	50	83	8	128	22	24	22	30	1.99
13224--13272	21	2.3	21	92	0	80	24	22	26	26	2.00
15730--15776	22	2.1	22	96	0	85	40	0	0	59	0.97
32858--32893	14	2.6	14	95	0	63	52	0	19	27	1.46
39461--39486	10	2.6	10	100	0	52	50	7	0	42	1.31
39822--39910	22	3.8	22	72	18	81	38	0	13	48	1.43
44830--44890	19	3.3	19	71	17	65	3	14	29	52	1.58
44834--44897	18	3.6	18	73	23	62	4	14	28	53	1.60
45452--45481	5	6.2	5	96	3	53	23	60	16	0	1.36
51796--51848	25	2.1	25	89	0	79	50	9	1	37	1.46
51813--51947	39	3.6	36	74	13	130	43	7	3	45	1.49
51839--51865	14	1.9	14	100	0	54	44	0	0	55	0.99
52205--52251	18	2.6	19	77	16	55	36	2	2	59	1.21
58647--58715	29	2.4	29	95	2	122	42	10	18	28	1.83
60645--60684	21	1.9	21	90	10	64	55	5	7	32	1.50
61216--61876	332	2.0	331	96	0	1223	34	11	20	33	1.89
64864--64995	23	6.0	22	79	7	135	25	25	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64864--64995	43	3.0	44	85	5	153	25	25	19	29	1.99
67633--67789	65	2.4	64	85	7	210	30	24	21	23	1.99
70960--71351	83	4.8	82	86	4	494	41	4	10	43	1.59
71038--71173	42	3.3	41	62	14	98	43	3	8	44	1.53
74725--74837	35	3.2	34	85	5	145	42	21	0	35	1.59
75879--75990	35	3.2	34	83	5	134	34	0	21	42	1.59
76205--76256	23	2.3	20	75	18	50	26	0	3	69	1.06

Tables:   1

The End!