genome.fa.s5805.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005805.1 Hibiscus syriacus cultivar Beakdansim tig00013613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136867

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472--561	20	4.6	20	82	9	96	22	20	21	36	1.95
471--703	40	5.8	39	74	11	161	27	18	19	33	1.96
558--613	20	2.7	21	80	5	69	42	16	21	19	1.89
551--623	21	3.5	21	79	3	76	36	17	21	23	1.94
633--703	19	3.5	20	84	5	90	21	21	16	40	1.91
512--751	122	2.0	120	82	7	288	29	18	20	31	1.97
693--745	21	2.5	22	81	6	74	33	18	26	20	1.96
1194--1231	20	1.9	20	84	10	51	36	2	15	44	1.61
1554--1584	11	2.7	11	95	5	53	29	22	25	22	1.99
3958--4029	18	3.9	18	81	1	72	19	47	15	18	1.83
6789--6911	62	2.0	63	84	7	162	17	26	28	26	1.98
6790--6921	63	2.1	62	82	9	153	17	27	28	27	1.98
7656--7778	20	5.9	20	66	11	59	33	21	16	29	1.95
7741--7787	22	2.1	22	96	0	85	27	27	12	31	1.93
7772--7972	96	2.1	97	87	2	289	39	16	14	28	1.88
9254--9302	25	2.0	25	91	0	80	22	8	14	55	1.65
14201--14259	20	3.4	17	71	26	52	25	6	0	67	1.15
16713--16745	13	2.5	13	95	0	57	9	15	0	75	1.03
17496--17557	24	2.6	25	90	10	103	43	0	6	50	1.28
17991--18020	14	2.1	14	93	0	51	40	10	20	30	1.85
20180--20226	22	2.1	23	92	4	78	29	10	12	46	1.76
20321--20521	99	2.0	101	97	1	379	32	11	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21373--21411	16	2.5	16	87	4	53	71	10	5	12	1.28
24423--24542	40	3.1	39	93	2	197	24	17	26	31	1.97
24647--24772	47	2.8	45	85	5	164	39	7	23	29	1.83
26263--26292	13	2.3	13	100	0	60	73	0	13	13	1.10
30129--30250	40	3.0	40	100	0	244	22	17	27	32	1.96
30355--30480	47	2.8	45	84	5	155	39	7	23	30	1.81
39731--39805	35	2.1	37	85	5	100	41	14	14	29	1.86
40272--40352	11	7.3	11	72	18	51	34	3	2	59	1.29
40514--40548	16	2.2	16	89	0	52	31	5	0	62	1.18
40529--40578	21	2.4	22	80	10	59	28	4	2	66	1.21
45457--45560	36	2.9	36	92	0	163	23	24	13	39	1.90
45592--45662	37	1.9	37	88	0	106	23	21	12	42	1.87
45475--45865	102	3.9	102	94	0	651	28	20	12	38	1.89
45678--45764	37	2.4	37	88	1	122	25	20	13	40	1.89
45475--45932	204	2.2	202	88	1	673	29	20	12	37	1.90
45779--45863	36	2.4	36	86	4	109	27	18	12	41	1.87
45807--45965	67	2.4	67	86	6	216	32	20	11	35	1.88
46545--47014	109	4.4	109	86	4	598	31	26	20	21	1.98
46606--47169	217	2.7	215	82	6	600	32	25	20	21	1.98
46545--47172	108	5.9	102	82	7	462	31	25	20	21	1.98
47630--47701	35	2.0	37	89	5	112	43	15	12	29	1.83
48174--48256	11	7.3	11	73	17	53	34	3	2	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48423--48456	16	2.1	16	88	0	50	32	5	0	61	1.20
52021--52262	35	6.9	35	66	18	83	42	12	17	26	1.85
52127--52260	35	3.9	34	77	4	135	41	13	20	25	1.88
52121--52251	69	1.9	69	84	3	174	41	14	19	23	1.88
58323--58360	20	1.9	20	88	0	58	21	26	36	15	1.93
66147--66188	15	2.7	16	78	17	52	4	35	0	59	1.19
70098--70184	37	2.4	35	84	7	120	35	2	17	44	1.61
74641--74719	35	2.3	35	82	6	106	37	2	16	43	1.62
75818--75850	2	16.5	2	100	0	66	48	0	0	51	1.00
78211--78251	2	20.5	2	100	0	82	51	0	0	48	1.00
79701--79742	2	21.5	2	95	4	77	50	0	0	50	1.00
83029--83068	19	2.1	19	90	0	62	12	60	17	10	1.59
83728--83800	36	2.0	36	91	0	119	42	8	19	30	1.80
85363--85450	24	3.7	24	80	6	97	20	13	18	47	1.82
85363--85455	12	7.8	12	70	9	64	19	13	18	48	1.81
85349--85457	48	2.3	48	85	3	139	19	15	17	47	1.82
86995--87081	31	2.8	31	82	0	102	33	12	11	42	1.79
88791--88843	26	2.0	28	81	7	65	22	5	7	64	1.41
88933--88962	14	2.1	14	93	0	51	56	20	13	10	1.65
89984--90129	71	2.1	71	94	1	258	26	23	12	36	1.91
90616--90725	31	3.5	31	88	0	157	35	1	15	47	1.56
90639--90687	16	3.1	16	70	5	55	32	2	20	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109342--109402	23	2.7	23	94	0	104	31	26	24	18	1.97
114452--114478	3	9.0	3	100	0	54	33	0	0	66	0.92
114715--114775	23	2.7	23	89	0	95	34	26	21	18	1.96
118986--119052	15	4.5	15	90	0	98	25	13	35	25	1.92
122189--122238	24	2.1	24	100	0	100	36	16	10	38	1.82
129803--129848	16	2.9	17	81	15	55	67	2	0	30	1.03
129992--130053	11	5.7	11	75	17	51	66	1	3	29	1.17
130042--130082	17	2.4	18	80	12	50	63	2	4	29	1.28

Tables:   1

The End!