Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005806.1 Hibiscus syriacus cultivar Beakdansim tig00013614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89155

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5080--5174
24
4.0
24
83
2
102
50
16
13
18
1.78
5082--5151
12
5.8
12
73
6
61
51
18
14
15
1.77
10579--10653
28
2.6
27
78
15
87
45
2
12
40
1.55
10579--10652
30
2.6
29
81
12
89
44
2
12
40
1.56
11870--11929
20
3.0
20
72
15
54
60
0
0
40
0.97
12056--12089
9
3.7
9
92
4
50
23
5
17
52
1.66
17054--17095
14
3.3
13
81
18
61
61
2
0
35
1.09
17298--17651
80
4.4
79
82
1
411
27
20
17
35
1.95
17298--17651
160
2.2
160
84
2
460
27
20
17
35
1.95
30185--30229
14
3.4
14
79
14
60
62
2
0
35
1.08
30821--30867
21
2.2
21
96
0
85
61
12
12
12
1.57
32704--32751
23
2.1
23
84
0
60
41
8
14
35
1.76
32502--32738
87
2.7
87
97
0
438
43
9
14
32
1.78
35849--36560
200
3.6
200
94
0
1246
31
18
14
36
1.91
37157--37203
20
2.4
19
82
10
67
19
17
10
53
1.72
37000--37415
182
2.3
182
89
0
629
26
16
14
42
1.87
41945--41979
18
1.9
18
88
0
52
40
5
8
45
1.58
45616--45641
9
2.9
9
100
0
52
19
0
11
69
1.18
48376--48532
65
2.4
63
87
9
219
29
22
19
27
1.98
49824--49998
36
4.9
36
87
1
244
42
20
18
18
1.89
52088--52128
17
2.3
18
80
16
50
34
0
4
60
1.18
53275--53379
3
35.0
3
98
0
201
67
0
32
0
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56643--56684
18
2.4
18
96
4
77
42
23
23
9
1.83
59760--59804
22
2.0
22
95
0
81
57
8
22
11
1.60
64537--64575
13
3.1
13
92
3
62
41
7
0
51
1.31
65588--65631
21
2.1
21
82
0
52
9
43
15
31
1.79
66704--66915
65
3.3
65
79
11
213
29
24
18
26
1.98
66885--66933
19
2.6
19
84
9
57
24
28
20
26
1.99
69211--69323
46
2.5
45
94
2
190
27
22
7
42
1.81
70884--70910
10
2.7
10
100
0
54
51
14
0
33
1.43
71500--71585
3
28.3
3
97
2
163
67
0
0
32
0.91
77340--77389
14
3.5
14
78
5
55
62
6
12
20
1.50
79073--79125
22
2.4
22
93
6
90
22
32
7
37
1.82
79302--79628
66
4.9
66
84
1
393
38
11
18
30
1.87
79327--79628
133
2.3
132
88
0
433
39
11
18
29
1.87
85089--85126
14
2.6
15
83
4
51
57
7
15
18
1.62
85219--85259
20
2.1
20
86
4
57
70
2
4
21
1.18
85812--85844
17
1.9
17
93
0
57
21
0
3
75
0.93
85800--85846
25
2.0
24
91
8
78
23
2
4
70
1.16
85800--85844
12
3.7
12
80
14
56
22
2
4
71
1.15

Tables:   1

The End!