genome.fa.s5809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005809.1 Hibiscus syriacus cultivar Beakdansim tig00013619_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65256

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577--614	20	1.9	20	94	0	67	34	28	18	18	1.95
578--623	20	2.3	20	82	10	60	34	32	17	15	1.91
9936--9991	24	2.3	25	84	3	69	30	14	7	48	1.70
10575--10632	29	2.0	29	93	0	98	25	24	13	36	1.92
12802--12848	21	2.2	21	84	0	67	21	25	14	38	1.92
12844--12937	20	4.7	20	81	2	125	38	20	20	21	1.94
12844--12937	41	2.3	40	85	1	125	38	20	20	21	1.94
12844--12957	61	1.9	60	88	1	174	35	21	20	22	1.96
13137--13198	22	2.8	22	87	0	88	25	37	12	24	1.91
13549--13601	20	2.7	20	84	0	70	20	18	22	37	1.94
13584--13623	20	2.0	20	100	0	80	15	15	15	55	1.71
13588--13631	20	2.2	20	87	0	61	20	13	13	52	1.74
15487--15637	34	4.3	34	73	14	144	42	21	19	17	1.89
15487--15559	33	2.2	34	85	2	94	46	23	16	13	1.82
15564--15620	20	2.8	20	97	0	105	42	17	19	21	1.90
15667--15764	20	4.9	20	94	0	142	22	18	21	37	1.94
16257--16361	21	5.0	21	71	3	86	20	36	19	23	1.95
16283--16364	42	2.0	42	82	4	103	21	37	19	20	1.94
17749--17784	14	2.6	14	90	0	54	30	0	22	47	1.52
17961--18029	20	3.5	20	90	4	104	18	21	23	36	1.95
20265--20297	3	11.0	3	100	0	66	0	33	0	66	0.92
20472--20525	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20472--20539	24	2.8	24	84	0	64	38	20	17	23	1.93
21339--21425	20	4.3	20	98	0	156	21	19	25	33	1.97
21419--21525	20	5.3	20	84	2	151	20	19	20	39	1.93
21359--21525	40	4.2	40	79	11	146	20	19	22	37	1.95
21412--21525	41	2.8	40	86	1	156	20	20	20	39	1.93
21522--21567	21	2.2	21	92	0	74	39	17	26	17	1.91
23945--23986	11	3.7	11	79	17	50	21	16	30	30	1.95
23944--24003	23	2.6	23	91	0	93	20	20	30	30	1.97
26600--26635	2	18.0	2	100	0	72	50	0	0	50	1.00
28988--29019	12	2.6	13	80	19	50	15	62	15	6	1.51
31575--31649	2	38.0	2	97	2	143	49	0	0	50	1.00
33364--33400	20	1.9	19	89	10	58	45	10	24	18	1.81
48208--48232	12	2.1	12	100	0	50	32	8	8	52	1.60
49785--50078	98	3.0	98	98	1	563	32	4	13	49	1.61
51968--52008	21	2.0	21	86	13	59	70	0	7	21	1.11
52178--52202	2	12.5	2	100	0	50	52	0	0	48	1.00
53482--53713	106	2.2	107	88	0	331	21	17	26	34	1.96
54124--54251	31	3.9	31	72	17	82	33	12	21	32	1.90
54027--54218	67	2.8	67	86	1	258	37	13	21	27	1.91
54173--54287	33	3.5	33	89	5	162	32	11	19	37	1.87
54328--54684	36	10.4	36	71	17	185	39	12	18	29	1.87
54456--54514	30	2.0	30	86	6	84	32	10	16	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54469--54773	102	3.0	102	94	1	504	37	13	19	30	1.89
64199--64240	18	2.3	18	100	0	84	33	21	30	14	1.93

Tables:   1

The End!