genome.fa.s5810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005810.1 Hibiscus syriacus cultivar Beakdansim tig00013620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116035

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206--245	11	4.0	11	81	18	52	47	25	0	27	1.52
563--631	23	3.0	23	85	4	95	27	24	26	21	1.99
647--964	103	3.1	102	92	4	534	36	23	12	27	1.91
2059--2104	21	2.2	21	84	0	56	13	26	30	30	1.93
4588--4640	16	3.2	16	78	5	61	43	26	0	30	1.55
4588--4634	12	4.2	12	76	17	57	42	27	0	29	1.56
4970--5038	23	3.0	23	81	8	86	28	26	24	20	1.99
5054--5374	103	3.1	103	97	0	588	36	23	13	26	1.91
9294--9387	46	2.1	45	82	13	113	17	23	24	35	1.95
9324--9387	23	2.8	23	83	9	94	15	25	26	32	1.95
13822--13882	23	2.6	24	79	5	81	18	22	29	29	1.97
20370--20407	20	1.9	20	88	0	58	28	13	15	42	1.85
20730--20784	3	18.3	3	100	0	110	67	0	0	32	0.91
21365--21417	21	2.5	21	79	14	56	35	1	3	58	1.27
21529--21596	29	2.3	30	85	10	86	35	27	8	27	1.87
22262--22327	22	3.0	22	81	0	78	25	37	15	21	1.92
22698--22744	20	2.3	20	88	0	67	19	17	25	38	1.92
22712--22766	20	2.8	20	91	0	83	10	16	23	49	1.77
22731--22774	20	2.2	20	87	0	61	13	13	20	52	1.74
24630--24768	20	7.6	20	74	21	117	43	21	17	16	1.87
24686--24804	53	2.2	52	81	7	141	44	19	19	16	1.87
24686--24804	20	6.7	19	74	19	96	44	19	19	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24633--24798	87	1.9	87	93	0	287	45	20	18	15	1.86
24813--24859	20	2.3	20	88	0	67	21	19	23	36	1.95
24781--24949	87	1.9	87	89	0	257	17	19	22	40	1.92
24833--24926	33	2.8	34	81	3	127	12	19	23	44	1.85
24898--24946	20	2.5	20	100	0	98	14	20	26	38	1.91
24898--24956	20	3.0	20	89	0	64	15	18	23	42	1.88
25427--25537	42	2.6	42	77	5	109	20	36	18	24	1.94
26980--27066	33	2.6	34	87	3	122	16	24	17	42	1.88
27041--27129	20	4.4	20	91	2	144	17	23	24	33	1.96
29559--29618	24	2.5	24	91	0	93	40	18	16	25	1.91
29575--29626	24	2.2	24	89	0	77	38	19	17	25	1.93
30491--30604	21	5.4	21	100	0	228	18	22	19	39	1.92
30611--30662	21	2.5	21	87	6	70	36	15	23	25	1.93
35429--35500	20	3.6	20	94	0	126	40	15	19	25	1.90
35489--35576	20	4.4	20	94	0	140	27	27	20	25	1.99
35367--35515	40	3.7	40	74	11	140	31	20	18	30	1.96
36397--36450	24	2.2	24	93	0	90	20	18	20	40	1.91
38698--38732	18	1.9	18	94	0	61	54	25	2	17	1.57
38892--39219	20	17.6	20	73	15	276	34	22	19	23	1.96
38892--39036	54	2.7	54	92	0	245	36	24	17	22	1.94
38900--39219	94	3.5	93	89	3	443	34	23	19	23	1.97
38892--39150	74	3.5	74	75	6	265	35	22	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39209--39266	20	2.9	20	84	0	80	12	17	25	44	1.83
39365--39426	14	4.3	14	73	6	52	45	14	0	40	1.45
42479--42525	20	2.5	18	89	6	67	34	27	19	19	1.96
42786--42872	20	4.3	20	88	5	113	34	26	18	20	1.96
42916--42963	20	2.4	20	92	0	78	18	20	27	33	1.96
43111--43160	18	2.8	18	93	0	91	42	4	20	34	1.70
44891--44997	20	5.4	20	82	3	101	46	21	16	14	1.83
45379--45435	22	2.6	22	80	0	78	19	19	40	21	1.92
45607--45693	20	4.3	20	94	0	138	21	21	26	29	1.99
45687--45733	20	2.3	20	100	0	94	23	19	17	40	1.91
45729--45781	21	2.5	22	71	6	54	39	18	22	18	1.92
46364--46426	20	3.2	20	70	29	55	50	1	0	47	1.10
47024--47141	62	1.9	62	84	3	157	31	16	14	37	1.89
47348--47474	60	2.1	60	82	8	152	37	18	14	29	1.90
49060--49090	14	2.1	15	94	5	55	25	9	0	64	1.24
49167--49249	29	2.9	29	92	3	132	19	25	3	51	1.62
49505--49543	20	2.0	19	85	5	51	66	5	7	20	1.36
51287--51311	2	12.5	2	100	0	50	52	0	0	48	1.00
53347--53689	43	8.0	42	81	6	325	35	20	21	22	1.96
53384--53701	85	3.7	84	84	7	356	35	20	21	22	1.96
53347--53696	128	2.7	127	80	7	359	36	20	21	22	1.96
57200--57656	41	11.3	41	78	8	407	34	17	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57236--57620	125	3.2	125	80	5	359	35	17	18	28	1.94
57183--57640	166	2.8	165	88	3	673	33	17	19	29	1.95
57479--57620	74	1.9	72	92	2	239	34	17	17	30	1.93
57438--57657	115	1.9	114	87	4	327	32	18	18	30	1.95
60428--60467	21	1.9	21	89	0	62	15	27	25	32	1.95
64158--64214	7	7.0	9	74	22	63	24	29	7	38	1.82
64157--64214	16	3.6	16	95	0	107	24	29	6	39	1.81
67251--67315	22	2.8	23	80	13	80	40	18	6	35	1.76
74190--74243	23	2.3	24	80	6	65	24	9	42	24	1.83
74242--74294	23	2.3	23	80	0	61	33	26	18	20	1.96
78754--78786	14	2.4	14	85	14	50	42	0	0	57	0.98
80044--80074	15	2.1	15	93	0	53	70	0	22	6	1.09
83376--83423	14	3.3	15	88	5	73	16	8	2	72	1.18
90820--90906	35	2.5	34	78	12	88	52	10	9	27	1.65
99096--99141	13	3.5	13	80	14	51	60	0	0	39	0.97
99097--99151	22	2.3	25	87	12	80	60	0	0	40	0.97
99105--99159	11	4.7	13	78	19	59	58	0	1	40	1.09
115303--115339	6	6.2	6	87	0	56	2	18	48	29	1.62

Tables:   1

The End!