Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005811.1 Hibiscus syriacus cultivar Beakdansim tig00013621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53510

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
614--646
15
2.1
16
88
5
50
24
0
0
75
0.80
4581--5160
290
2.0
289
96
1
1083
39
21
14
25
1.90
11693--11733
13
3.2
13
83
16
50
19
2
0
78
0.87
11693--11733
18
2.3
18
88
12
59
19
2
0
78
0.87
17264--17380
56
2.1
56
84
10
152
31
23
19
25
1.98
23875--23932
18
3.2
18
95
0
107
22
50
17
10
1.76
26383--26491
24
4.5
24
75
4
103
20
15
16
47
1.82
26653--26683
2
15.5
2
100
0
62
48
0
0
51
1.00
27288--27389
44
2.3
43
86
6
143
27
24
21
26
1.99
27287--27384
20
4.5
21
77
15
85
27
23
21
27
1.99
30048--30255
65
3.2
63
80
10
224
30
23
18
27
1.98
30096--30275
65
2.8
64
80
13
199
28
22
18
30
1.97
34002--34061
21
2.9
20
82
7
68
11
25
38
25
1.89
37871--37910
21
1.9
21
85
10
55
35
10
2
52
1.48
40996--41057
22
2.8
22
85
0
70
25
22
17
33
1.96
43962--44030
2
34.5
2
100
0
138
49
0
0
50
1.00
44423--44457
15
2.3
15
100
0
70
37
5
0
57
1.23
46123--46181
25
2.3
26
77
13
70
42
0
1
55
1.09
47910--47991
42
2.0
42
87
0
119
28
35
14
21
1.93
48566--48602
18
2.1
18
94
0
65
27
0
13
59
1.35
48475--48626
84
1.9
83
87
5
229
37
5
10
46
1.61
48959--49494
137
3.9
136
83
5
636
34
22
18
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48959--49494
274
2.0
273
85
5
744
34
22
18
23
1.96
51609--51649
21
2.0
21
95
0
73
24
26
14
34
1.94
52482--52537
28
2.0
29
85
3
78
37
7
26
28
1.83
52998--53033
2
18.5
2
94
5
65
50
0
0
50
1.00

Tables:   1

The End!