Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005812.1 Hibiscus syriacus cultivar Beakdansim tig00013622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52575

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294--410
56
2.1
55
84
10
150
25
19
23
31
1.98
5911--5951
13
3.1
14
86
10
52
78
0
2
19
0.87
5911--5951
18
2.4
17
88
12
57
78
0
2
19
0.87
17037--17511
182
2.7
180
89
4
716
41
14
17
26
1.88
17913--17951
19
2.1
19
100
0
78
46
0
20
33
1.51
19202--19929
199
3.7
199
88
2
1052
39
13
15
30
1.86
19763--20102
172
2.0
174
84
4
447
40
15
15
28
1.87
24320--24757
200
2.2
198
86
4
585
39
15
15
29
1.88
25137--25277
64
2.2
64
84
2
185
25
12
9
52
1.69
25596--25757
43
3.7
43
83
4
155
30
3
20
45
1.68
25682--26048
157
2.3
157
90
2
578
41
7
16
35
1.75
26213--26282
21
3.3
21
93
0
122
44
20
4
31
1.70
26413--26447
18
1.9
18
88
0
52
42
20
11
25
1.85
28621--28664
11
4.2
11
82
11
56
36
0
6
56
1.26
28665--28739
9
7.9
9
69
16
53
36
1
21
41
1.62
28665--28762
29
3.4
27
77
12
90
35
1
20
42
1.59
28752--28848
11
8.9
11
72
18
60
37
1
8
53
1.38
28689--28838
29
4.8
32
75
18
133
34
1
14
49
1.52
28877--29161
95
3.0
96
92
2
466
29
8
15
47
1.74
37618--37653
11
3.4
11
96
3
65
5
0
8
86
0.72
37611--37670
18
3.2
18
77
11
57
5
5
10
80
1.02
41021--41064
19
2.2
20
88
11
65
2
9
11
77
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41636--41661
9
2.9
9
100
0
52
34
11
19
34
1.88
48279--48317
21
1.9
20
84
5
51
28
15
20
35
1.93

Tables:   1

The End!