Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005813.1 Hibiscus syriacus cultivar Beakdansim tig00013626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99247
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:21 original size:2 final size:2
Alignment explanation
Indices: 14--60 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
4 TATTTATTAC
*
14 TA TA TA TA -A TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55 TA TA TA
1 TA TA TA
61 GTATGTATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:126 original size:14 final size:12
Alignment explanation
Indices: 33--129 Score: 52
Period size: 12 Copynumber: 7.6 Consensus size: 12
23 TTTATATATA
* *
33 TATATATATATA
1 TATATATGTATG
* *
45 TATATATATATA
1 TATATATGTATG
57 TATAGTATGTATG
1 TATA-TATGTATG
70 -ATCACTGATGTATG
1 TAT-A-T-ATGTATG
* *
84 TTTTATTTGTATG
1 -TATATATGTATG
* *
97 TATATAAGTATA
1 TATATATGTATG
109 TATATGCATGTATG
1 TATAT--ATGTATG
123 TATATAT
1 TATATAT
130 AAAGTATAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
12 33 0.49
13 14 0.21
14 18 0.27
15 1 0.01
16 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (12 bp):
TATATATGTATG
Found at i:146 original size:20 final size:21
Alignment explanation
Indices: 123--171 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
113 TGCATGTATG
123 TATATATA-AAGTATAAAATA
1 TATATATAGAAGTATAAAATA
*
143 TATATAGTAGAAGTATAACATA
1 TATATA-TAGAAGTATAAAATA
165 TATATAT
1 TATATAT
172 TTATATATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 3 0.12
22 17 0.65
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
TATATATAGAAGTATAAAATA
Found at i:194 original size:24 final size:25
Alignment explanation
Indices: 123--220 Score: 71
Period size: 24 Copynumber: 4.0 Consensus size: 25
113 TGCATGTATG
123 TATATATA-AAGTATAAA--ATATA
1 TATATATACAAGTATAAAGTATATA
* * *
145 TATA-GTAGAAGTATAACATATATATA
1 TATATATACAAGTATAA-A-GTATATA
*
171 TTTATATATACAAGTAT-AAGTATAAA
1 --TATATATACAAGTATAAAGTATATA
* *
197 TGTATATATAAGTATAAAGTATAT
1 TATATATACAAGTATAAAGTATAT
221 GAAATTACAT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
21 2 0.03
22 12 0.20
23 1 0.02
24 13 0.22
25 7 0.12
26 10 0.17
27 1 0.02
28 5 0.08
29 8 0.14
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (25 bp):
TATATATACAAGTATAAAGTATATA
Found at i:206 original size:18 final size:17
Alignment explanation
Indices: 185--220 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
175 TATATACAAG
185 TATAAGTATAAATGTATA
1 TATAAGTATAAA-GTATA
203 TATAAGTATAAAGTATA
1 TATAAGTATAAAGTATA
220 T
1 T
221 GAAATTACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
TATAAGTATAAAGTATA
Found at i:1044 original size:21 final size:21
Alignment explanation
Indices: 970--1037 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
960 AAAACTCTTT
*
970 ATCTATTGTTCGTGT-CTCCTC
1 ATCTATTGTTC-TTTACTCCTC
991 ATCTATTGTTCTTTACTCCTC
1 ATCTATTGTTCTTTACTCCTC
* * *
1012 ATATGTTGTTCTTTATTCCTC
1 ATCTATTGTTCTTTACTCCTC
1033 ATCTA
1 ATCTA
1038 CTCTTCTCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
20 2 0.05
21 38 0.95
ACGTcount: A:0.15, C:0.25, G:0.09, T:0.51
Consensus pattern (21 bp):
ATCTATTGTTCTTTACTCCTC
Found at i:1403 original size:14 final size:14
Alignment explanation
Indices: 1379--1408 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1369 ATTTTTTCTA
1379 TTTGTATTTTTGTT
1 TTTGTATTTTTGTT
*
1393 TTTGTTTTTTTGTT
1 TTTGTATTTTTGTT
1407 TT
1 TT
1409 CTATTGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.83
Consensus pattern (14 bp):
TTTGTATTTTTGTT
Found at i:3800 original size:21 final size:21
Alignment explanation
Indices: 3776--3820 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
3766 GGCTTTATCA
3776 TTGTTTGGACTGGTATGAATG
1 TTGTTTGGACTGGTATGAATG
3797 TTGTTTGGACTGGTATGAATG
1 TTGTTTGGACTGGTATGAATG
3818 TTG
1 TTG
3821 ACTGGACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.44
Consensus pattern (21 bp):
TTGTTTGGACTGGTATGAATG
Found at i:3826 original size:21 final size:21
Alignment explanation
Indices: 3781--3828 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
3771 TATCATTGTT
**
3781 TGGACTGGTATGAATGTTGTT
1 TGGACTGGTATGAATGTTGAC
3802 TGGACTGGTATGAATGTTGAC
1 TGGACTGGTATGAATGTTGAC
3823 TGGACT
1 TGGACT
3829 TGGTCTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.08, G:0.33, T:0.38
Consensus pattern (21 bp):
TGGACTGGTATGAATGTTGAC
Found at i:8789 original size:3 final size:3
Alignment explanation
Indices: 8781--8810 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8771 TAATTCTTTA
8781 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8811 TATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8815 original size:3 final size:3
Alignment explanation
Indices: 8809--8837 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8799 AATAATAATA
8809 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8838 AATAGCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9142 original size:15 final size:16
Alignment explanation
Indices: 9122--9151 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9112 TTATACTTTT
9122 TTTA-TTTAAAAAAAC
1 TTTATTTTAAAAAAAC
9137 TTTATTTTAAAAAAA
1 TTTATTTTAAAAAAA
9152 TCACCACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTATTTTAAAAAAAC
Found at i:10498 original size:31 final size:31
Alignment explanation
Indices: 10460--10521 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
10450 GGGTTTGGGG
10460 GAGTTTTGGCATGTAAAATAAATGATCAGGC
1 GAGTTTTGGCATGTAAAATAAATGATCAGGC
*
10491 GAGTTTTGGTATGTAAAATAAATGATCAGGC
1 GAGTTTTGGCATGTAAAATAAATGATCAGGC
10522 AATATGTATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (31 bp):
GAGTTTTGGCATGTAAAATAAATGATCAGGC
Found at i:14254 original size:24 final size:25
Alignment explanation
Indices: 14213--14259 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
14203 ACTCAAAAAA
14213 AAAATTAGAAGCTCGATTGAAGTCT
1 AAAATTAGAAGCTCGATTGAAGTCT
* *
14238 AAAATTCG-AGCTTGATTGAAGT
1 AAAATTAGAAGCTCGATTGAAGT
14260 GAAAGAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAATTAGAAGCTCGATTGAAGTCT
Found at i:14713 original size:22 final size:21
Alignment explanation
Indices: 14673--14713 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14663 ATAAAAAATT
14673 ATTTTTTATTAAATATTTTTG
1 ATTTTTTATTAAATATTTTTG
*
14694 ATTTTTTGATTTAAT-TTTTT
1 ATTTTTT-ATTAAATATTTTT
14714 AAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
ATTTTTTATTAAATATTTTTG
Found at i:17958 original size:29 final size:29
Alignment explanation
Indices: 17912--17976 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
17902 TTCTATGTTA
*
17912 AGGGGGCGAACTTAAACTTATAAAATTTT
1 AGGGGGCGAACTTAAACTTATAAAATTAT
* *
17941 AGGGGGTGAACTTGAACTTATAAAATTAT
1 AGGGGGCGAACTTAAACTTATAAAATTAT
17970 AGGGGGC
1 AGGGGGC
17977 TAAAACAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (29 bp):
AGGGGGCGAACTTAAACTTATAAAATTAT
Found at i:18121 original size:22 final size:22
Alignment explanation
Indices: 18096--18137 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
18086 GATTGAAATT
*
18096 ATTGA-AATAATTAATTGATAAA
1 ATTGATAA-AATTAATAGATAAA
18118 ATTGATAAAATTAATAGATA
1 ATTGATAAAATTAATAGATA
18138 GATAACCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (22 bp):
ATTGATAAAATTAATAGATAAA
Found at i:30451 original size:3 final size:3
Alignment explanation
Indices: 30445--30502 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
30435 AAAAAATATG
* **
30445 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
30489 TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA
30503 CGATAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:30465 original size:28 final size:30
Alignment explanation
Indices: 30447--30508 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
30437 AAAATATGTA
*
30447 ATAATAAATAATAATAAAATAATAAGATAAC
1 ATAAT-AATAATAATAAAAAAATAAGATAAC
*
30478 GATAATAATAATAATAATAAAATAACGATAA
1 -ATAATAATAATAATAAAAAAATAA-GATAA
30509 AAAAACCCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (30 bp):
ATAATAATAATAATAAAAAAATAAGATAAC
Found at i:30503 original size:26 final size:25
Alignment explanation
Indices: 30454--30508 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
30444 GTAATAATAA
*
30454 ATAATAATAAAATAATAAGATAACG
1 ATAATAATAAAATAATAAAATAACG
30479 ATAATAATAATAATAATAAAATAACG
1 ATAATAATAA-AATAATAAAATAACG
30505 ATAA
1 ATAA
30509 AAAAACCCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.25
Consensus pattern (25 bp):
ATAATAATAAAATAATAAAATAACG
Found at i:30724 original size:43 final size:43
Alignment explanation
Indices: 30660--31122 Score: 280
Period size: 43 Copynumber: 10.9 Consensus size: 43
30650 TGGTGGGGAC
* ** *
30660 GACACTGCTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGGT
*** *
30703 GACACGGCTCATACGTGATGAAGAGATCTGGTC-GGGAA--AT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGGT
* ** *
30743 GACACGACTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGGT
****
30786 GACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGAA---T
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGGT
* *
30826 GACACGACTCATACGTGATGAAGAGTTCTGG-CTATCTAAAGGTGAT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTC-ATCT-AAGG-G-T
* * * * * *
30872 AACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-AGGGT
1 GACACGGCTCATACGTGATGAAGA-GATCTGGTCATCTAAGGGT
* *
30914 GACACGACTCATACGTGATGAAGAGATCTGG---TCT-GGGGAT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGG-T
* * * * * *
30954 GACACGGTTCCTACATGATGAGGACG-GCTGGCCATCTAAAGGTGAT
1 GACACGGCTCATACGTGATGAAGA-GATCTGGTCATCT-AAGG-G-T
* * * * * * * *
31000 AACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTATGGTT
1 GACACGGCTCATACGTGATGAAGA-GATCTGGTCATCTAAGGGT
* * *
31043 GACACGGCTCCTACGTGATGAGGAGATCTGG---TCT-GGGGAAT
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGG--T
*
31084 GACACGGCTCATACGTGATGAGGAGATCTGGTCATCTAA
1 GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAA
31123 AGGAGTTATG
Statistics
Matches: 328, Mismatches: 64, Indels: 54
0.74 0.14 0.12
Matches are distributed among these distances:
39 9 0.03
40 87 0.27
41 37 0.11
42 27 0.08
43 92 0.28
44 6 0.02
45 5 0.02
46 64 0.20
47 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (43 bp):
GACACGGCTCATACGTGATGAAGAGATCTGGTCATCTAAGGGT
Found at i:30757 original size:40 final size:40
Alignment explanation
Indices: 30702--30856 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
30692 CATCTAAGGG
*
30702 TGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGAAA
1 TGACACGACTCATACGTGATGAAGAGATCTGGTCGGGAAA
** * *** *
30742 TGACACGACTCATACGCAATGAAGAGGTCTGGTCATCTAAGGG
1 TGACACGACTCATACGTGATGAAGAGATCTGGTC-GGGAA--A
* *
30785 TGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGAA
1 TGACACGACTCATACGTGATGAAGAGATCTGGTCGGGAAA
*
30825 TGACACGACTCATACGTGATGAAGAGTTCTGG
1 TGACACGACTCATACGTGATGAAGAGATCTGG
30857 CTATCTAAAG
Statistics
Matches: 93, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
40 60 0.65
41 2 0.02
42 1 0.01
43 30 0.32
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (40 bp):
TGACACGACTCATACGTGATGAAGAGATCTGGTCGGGAAA
Found at i:30799 original size:83 final size:83
Alignment explanation
Indices: 30667--30870 Score: 347
Period size: 83 Copynumber: 2.5 Consensus size: 83
30657 GACGACACTG
30667 CTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCT
1 CTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCT
30732 GGTCGGGAAATGACACGA
66 GGTCGGGAAATGACACGA
30750 CTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCT
1 CTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCT
*
30815 GGTCGGGGAATGACACGA
66 GGTCGGGAAATGACACGA
** * *
30833 CTCATACGTGATGAAGAGTTCTGG-CTATCTAAAGGTGA
1 CTCATACGCAATGAAGAGGTCTGGTC-ATCTAAGGGTGA
30871 TAACACGGTT
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
82 1 0.01
83 114 0.99
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (83 bp):
CTCATACGCAATGAAGAGGTCTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCT
GGTCGGGAAATGACACGA
Found at i:30908 original size:46 final size:45
Alignment explanation
Indices: 30853--31066 Score: 198
Period size: 46 Copynumber: 4.9 Consensus size: 45
30843 ATGAAGAGTT
*
30853 CTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
1 CTGGCTATCT-AAGGTGATGACACGGTTCCTACGTGATGAGGACGG
* ** * * *
30899 CTGGTTATCT-AGG-G-TGACACGACTCATACGTGATGAAGA-GAT
1 CTGGCTATCTAAGGTGATGACACGGTTCCTACGTGATGAGGACG-G
* *
30941 CTGG---TCT--GGGGATGACACGGTTCCTACATGATGAGGACGG
1 CTGGCTATCTAAGGTGATGACACGGTTCCTACGTGATGAGGACGG
* *
30981 CTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
1 CTGGCTATCT-AAGGTGATGACACGGTTCCTACGTGATGAGGACGG
* * *
31027 CTGGTTATCTATGGT--TGACACGGCTCCTACGTGATGAGGA
1 CTGGCTATCTAAGGTGATGACACGGTTCCTACGTGATGAGGA
31067 GATCTGGTCT
Statistics
Matches: 137, Mismatches: 21, Indels: 23
0.76 0.12 0.13
Matches are distributed among these distances:
38 2 0.01
39 4 0.03
40 24 0.18
41 2 0.01
42 24 0.18
43 27 0.20
44 3 0.02
45 4 0.03
46 47 0.34
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (45 bp):
CTGGCTATCTAAGGTGATGACACGGTTCCTACGTGATGAGGACGG
Found at i:30939 original size:128 final size:128
Alignment explanation
Indices: 30770--31125 Score: 529
Period size: 128 Copynumber: 2.8 Consensus size: 128
30760 ATGAAGAGGT
* *
30770 CTGGTCATCTAAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTC-GGGGAATGACACGAC
1 CTGGTTATCT-AGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGC
*
30834 TCATACGTGATGAAGAGTTCTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
65 TCATACGTGATGAGGAG-TCTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
* *
30899 CTGGTTATCTAGGGTGACACGACTCATACGTGATGAAGAGATCTGGTCTGGGG-ATGACACGGTT
1 CTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGCT
* * * *
30963 CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
66 CATACGTGATGAGGA-GTCTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
* * *
31027 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCTGGGGAATGACACGGC
1 CTGGTTATCTA-GGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGC
31092 TCATACGTGATGAGGAGATCTGG-TCATCTAAAGG
65 TCATACGTGATGAGGAG-TCTGGCT-ATCTAAAGG
31126 AGTTATGGTT
Statistics
Matches: 203, Mismatches: 18, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
128 114 0.56
129 53 0.26
130 36 0.18
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (128 bp):
CTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGCT
CATACGTGATGAGGAGTCTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
Found at i:30991 original size:82 final size:84
Alignment explanation
Indices: 30825--30991 Score: 230
Period size: 82 Copynumber: 2.0 Consensus size: 84
30815 GGTCGGGGAA
* * *
30825 TGACACGACTCATACGTGATGAAGAGTTCTGGCTATCTAAAGGTGATAACACGGTTCCTACGTGA
1 TGACACGACTCATACGTGATGAAGAGATCTGG--ATCT--AGGGGATAACACGGTTCCTACATGA
**
30890 TGAGGACGGCTGGTTATCTAGGG
62 TGAGGACGGCTGGCCATCTAGGG
*
30913 TGACACGACTCATACGTGATGAAGAGATCTGG-TCT-GGGGATGACACGGTTCCTACATGATGAG
1 TGACACGACTCATACGTGATGAAGAGATCTGGATCTAGGGGATAACACGGTTCCTACATGATGAG
30976 GACGGCTGGCCATCTA
66 GACGGCTGGCCATCTA
30992 AAGGTGATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
82 39 0.53
85 3 0.04
88 31 0.42
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (84 bp):
TGACACGACTCATACGTGATGAAGAGATCTGGATCTAGGGGATAACACGGTTCCTACATGATGAG
GACGGCTGGCCATCTAGGG
Found at i:31525 original size:37 final size:36
Alignment explanation
Indices: 31479--31594 Score: 104
Period size: 37 Copynumber: 3.3 Consensus size: 36
31469 TCAAAGATTT
31479 TTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTG
1 TTTCAAAAGAAA-TATCTTAAGAGAGACAAAATTTTG
* **
31516 TTTCCAAAG-AA-A-C-----AGACTCAAAGATTTTTG
1 TTTCAAAAGAAATATCTTAAGAGAGACAAA-A-TTTTG
31546 TTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTG
1 TTTCAAAAGAAA-TATCTTAAGAGAGACAAAATTTTG
*
31583 TTTCCAAAGAAA
1 TTTCAAAAGAAA
31595 CAAACTCAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
28 7 0.11
29 1 0.02
30 13 0.21
31 2 0.03
33 2 0.03
34 2 0.03
36 2 0.03
37 24 0.39
38 1 0.02
39 7 0.11
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (36 bp):
TTTCAAAAGAAATATCTTAAGAGAGACAAAATTTTG
Found at i:31566 original size:67 final size:65
Alignment explanation
Indices: 31405--31628 Score: 276
Period size: 67 Copynumber: 3.4 Consensus size: 65
31395 ATGAACATAT
** * * * * *
31405 TCAAAGATTTACTTCAAGAGAAACTGTCTCAAGAGATACAAAATTTAT-TTT--AAGAAAAACAG
1 TCAAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTT-TGTTTCCAA-AGAAACAG
*
31467 AT
64 AC
*
31469 TCAAAGA-TTTTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAGAC
1 TCAAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAGAC
*
31533 TCAAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAA
1 TCAAAGA-TTTT-TTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAG
31598 AC
64 AC
* *
31600 TCAAAGATTTTTTCCAAAAGAAACAATCT
1 TCAAAGATTTTTTTCAAAAGAAACTATCT
31629 CAAAGATTTT
Statistics
Matches: 141, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
62 1 0.01
63 34 0.24
64 22 0.16
65 18 0.13
66 7 0.05
67 59 0.42
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (65 bp):
TCAAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAGAC
Found at i:31619 original size:28 final size:28
Alignment explanation
Indices: 31583--31647 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
31573 CAAAATTTTG
31583 TTTCC-AAAGAAACAAACTCAAAGATTT
1 TTTCCAAAAGAAACAAACTCAAAGATTT
*
31610 TTTCCAAAAGAAACAATCTCAAAGATTT
1 TTTCCAAAAGAAACAAACTCAAAGATTT
31638 TTTCACAAAA
1 TTTC-CAAAA
31648 TTGTCTAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 5 0.14
28 25 0.71
29 5 0.14
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (28 bp):
TTTCCAAAAGAAACAAACTCAAAGATTT
Found at i:31684 original size:53 final size:55
Alignment explanation
Indices: 31627--31732 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 55
31617 AAGAAACAAT
** *
31627 CTCAAAGATT-TTTTCA-CAAAATTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
1 CTCAAAGATTGTTTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
* *
31680 CTCAAAGATTGTTTAAAGGAAAACTGTCTCAAGAGAGACAAAACTTTGTTTCA
1 CTCAAAGATTGTTTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCA
31733 AAATAAATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 10 0.22
54 4 0.09
55 32 0.70
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (55 bp):
CTCAAAGATTGTTTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
Found at i:31757 original size:26 final size:25
Alignment explanation
Indices: 31728--31849 Score: 100
Period size: 28 Copynumber: 4.5 Consensus size: 25
31718 CAAAACTTTG
* *
31728 TTTCAAAATAAATAGACTCAAAGATT
1 TTTCAAAAGAAACA-ACTCAAAGATT
31754 TTTCAAAAGAAACAACTCAAAGATATT
1 TTTCAAAAGAAACAACTCAAAG--ATT
* *
31781 TATTCAAAAGGAACAAACTCCAAGATTT
1 T-TTCAAAAGAAAC-AACTCAAAGA-TT
* *
31809 TATTTAAAAGGAACTAACTCAAAGATTT
1 T-TTCAAAAGAAAC-AACTCAAAGA-TT
*
31837 TTTCAAGAGAAAC
1 TTTCAAAAGAAAC
31850 TGTCTCAAGA
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
25 8 0.10
26 12 0.15
27 14 0.17
28 39 0.48
29 8 0.10
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (25 bp):
TTTCAAAAGAAACAACTCAAAGATT
Found at i:31795 original size:28 final size:27
Alignment explanation
Indices: 31743--31842 Score: 123
Period size: 28 Copynumber: 3.7 Consensus size: 27
31733 AAATAAATAG
*
31743 ACTCAAAGA-TTTTTCAAAAGAAAC-A
1 ACTCAAAGATTTTTTCAAAAGGAACAA
31768 ACTCAAAGATATTTATTCAAAAGGAACAA
1 ACTCAAAGAT-TTT-TTCAAAAGGAACAA
* * *
31797 ACTCCAAGATTTTATTTAAAAGGAACTA
1 ACTCAAAGATTTT-TTCAAAAGGAACAA
31825 ACTCAAAGATTTTTTCAA
1 ACTCAAAGATTTTTTCAA
31843 GAGAAACTGT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.14
27 7 0.11
28 39 0.60
29 10 0.15
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (27 bp):
ACTCAAAGATTTTTTCAAAAGGAACAA
Found at i:32163 original size:36 final size:35
Alignment explanation
Indices: 32123--32191 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 35
32113 TTAAGATATA
*
32123 GTCTCAAATGAGACAACA-TTTGTTTTTAGAGAAATT
1 GTCTCAAACGAGACAA-AGTTTGTTTTT-GAGAAATT
*
32159 GTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAA
1 GTCTCAAACGAGACAAAGTTTGTTTTTGAGAAA
32192 CGATCTCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 7 0.23
36 23 0.77
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (35 bp):
GTCTCAAACGAGACAAAGTTTGTTTTTGAGAAATT
Found at i:32199 original size:35 final size:36
Alignment explanation
Indices: 32090--32201 Score: 94
Period size: 36 Copynumber: 3.2 Consensus size: 36
32080 AGAAAATGAT
* * *
32090 GTCTCAAGCGAGACGAA-A-TTG-CTTTA-AGATATA
1 GTCTCAAGCGAGAC-AACATTTGTTTTTAGAGAAATC
** *
32123 GTCTCAAATGAGACAACATTTGTTTTTAGAGAAATT
1 GTCTCAAGCGAGACAACATTTGTTTTTAGAGAAATC
32159 GTCTCAAGCGAGACAA-AGTTTGTTTTT-GAGAAA-C
1 GTCTCAAGCGAGACAACA-TTTGTTTTTAGAGAAATC
32193 GATCTCAAG
1 G-TCTCAAG
32202 TGAAACGACA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
32 2 0.03
33 13 0.20
34 4 0.06
35 18 0.28
36 28 0.43
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (36 bp):
GTCTCAAGCGAGACAACATTTGTTTTTAGAGAAATC
Found at i:39843 original size:3 final size:3
Alignment explanation
Indices: 39837--39894 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
39827 AAAAAATATG
* **
39837 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
39881 TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA
39895 CGATAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:39857 original size:28 final size:30
Alignment explanation
Indices: 39839--39900 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
39829 AAAATATGTA
*
39839 ATAATAAATAATAATAAAATAATAAGATAAC
1 ATAAT-AATAATAATAAAAAAATAAGATAAC
*
39870 GATAATAATAATAATAATAAAATAACGATAA
1 -ATAATAATAATAATAAAAAAATAA-GATAA
39901 AAAAACCCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (30 bp):
ATAATAATAATAATAAAAAAATAAGATAAC
Found at i:39895 original size:26 final size:25
Alignment explanation
Indices: 39846--39900 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
39836 GTAATAATAA
*
39846 ATAATAATAAAATAATAAGATAACG
1 ATAATAATAAAATAATAAAATAACG
39871 ATAATAATAATAATAATAAAATAACG
1 ATAATAATAA-AATAATAAAATAACG
39897 ATAA
1 ATAA
39901 AAAAACCCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.25
Consensus pattern (25 bp):
ATAATAATAAAATAATAAAATAACG
Found at i:53243 original size:17 final size:17
Alignment explanation
Indices: 53218--53299 Score: 75
Period size: 17 Copynumber: 4.9 Consensus size: 17
53208 AAAATATGTA
53218 AAAAT-ATAATATTAAT
1 AAAATAATAATATTAAT
*
53234 AAAATAATAATATAAAT
1 AAAATAATAATATTAAT
*
53251 ATAAA-AATAATAATAAT
1 A-AAATAATAATATTAAT
53268 -AAATATATAA-A-TAAT
1 AAAATA-ATAATATTAAT
*
53283 AATAATAATAAAATTAA
1 AA-AATAATAATATTAA
53300 AATTAAATAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
15 7 0.13
16 12 0.22
17 30 0.55
18 6 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATAATAATATTAAT
Found at i:53244 original size:3 final size:3
Alignment explanation
Indices: 53223--53293 Score: 67
Period size: 3 Copynumber: 23.3 Consensus size: 3
53213 ATGTAAAAAT
* *
53223 ATA ATA TTA ATA A-A ATA ATA AT- ATA A-A TATA AAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
53266 ATAA ATA TATAA ATA ATA ATA ATA ATA A
1 AT-A ATA -AT-A ATA ATA ATA ATA ATA A
53294 AATTAAAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
2 5 0.09
3 43 0.75
4 8 0.14
5 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:53271 original size:21 final size:21
Alignment explanation
Indices: 53234--53290 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
53224 TAATATTAAT
53234 AAAATAATAAT-ATAAATATA
1 AAAATAATAATAATAAATATA
53254 AAAATAATAATAATAAATATA
1 AAAATAATAATAATAAATATA
*
53275 TAAATAATAATAATAA
1 AAAATAATAATAATAA
53291 TAAAATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 11 0.31
21 24 0.69
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATAATAATAATAAATATA
Found at i:53523 original size:43 final size:43
Alignment explanation
Indices: 53462--53693 Score: 155
Period size: 43 Copynumber: 5.5 Consensus size: 43
53452 TGTTGGGGAC
* * * *
53462 GACACTGCTCATACGTGATGAAGAGTTCGGGTCGTCTAAAGG-T
1 GACACGGCTCCTACGTGATGAAGAG-TCTGGTCATCTAAAGGAT
**
53505 GACACGGCTCCTACGTGATGAGGAGAG-CTGG---TC-AGGGGAT
1 GACACGGCTCCTACGTGATGA--AGAGTCTGGTCATCTAAAGGAT
*
53545 GACACGGCTCATACGTGATGAAGAGTTCTGGTCATCTAAAGGTGAT
1 GACACGGCTCCTACGTGATGAAGAG-TCTGGTCATCTAAA-G-GAT
* * * * * * *
53591 AACACGGTTCCTACGTGATGAGGACGGCTGGTTATCT-ATGGTT
1 GACACGGCTCCTACGTGATGAAGA-GTCTGGTCATCTAAAGGAT
* *
53634 GACACGGCTCCTACGTGATGAGGAGGTCTGG---TCT--GGGAT
1 GACACGGCTCCTACGTGATGAAGA-GTCTGGTCATCTAAAGGAT
*
53673 GACACGGTTCCTACGTGATGA
1 GACACGGCTCCTACGTGATGA
53694 GGACGGCTGG
Statistics
Matches: 154, Mismatches: 23, Indels: 28
0.75 0.11 0.14
Matches are distributed among these distances:
38 4 0.03
39 26 0.17
40 30 0.19
43 53 0.34
44 2 0.01
45 6 0.04
46 32 0.21
47 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (43 bp):
GACACGGCTCCTACGTGATGAAGAGTCTGGTCATCTAAAGGAT
Found at i:53622 original size:46 final size:43
Alignment explanation
Indices: 53504--53709 Score: 182
Period size: 46 Copynumber: 4.9 Consensus size: 43
53494 CGTCTAAAGG
*
53504 TGACACGGCTCCTACGTGATGAGGAGAGCTGG---TC-AGGGGA
1 TGACACGGCTCCTACGTGATGAGGAG-GCTGGTCATCTAGGTGA
* * *
53544 TGACACGGCTCATACGTGATGAAGAGTTCTGGTCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGAG-GCTGGTCATCT--AGGTGA
* * *
53590 TAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGT--
1 TGACACGGCTCCTACGTGATGAGGA-GGCTGGTCATCTA-GGTGA
53633 TGACACGGCTCCTACGTGATGAGGAGGTCTGG---TCT-GG-GA
1 TGACACGGCTCCTACGTGATGAGGAGG-CTGGTCATCTAGGTGA
* *
53672 TGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCT
1 TGACACGGCTCCTACGTGATGAGGA-GGCTGGTCATCT
53710 TTAGGGATTA
Statistics
Matches: 137, Mismatches: 14, Indels: 28
0.77 0.08 0.16
Matches are distributed among these distances:
38 2 0.01
39 28 0.20
40 33 0.24
42 5 0.04
43 29 0.21
44 1 0.01
45 3 0.02
46 35 0.26
47 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (43 bp):
TGACACGGCTCCTACGTGATGAGGAGGCTGGTCATCTAGGTGA
Found at i:53687 original size:39 final size:41
Alignment explanation
Indices: 53504--53703 Score: 171
Period size: 40 Copynumber: 4.8 Consensus size: 41
53494 CGTCTAAAGG
*
53504 TGACACGGCTCCTACGTGATGAGGA-GAGCTGG-TC-AGGGGA
1 TGACACGGTTCCTACGTGATGAGGACG-GCTGGTTCTA-GGGA
* * * *
53544 TGACACGGCTCATACGTGATGAAGA-GTTCTGGTCATCTAAAGGTGA
1 TGACACGGTTCCTACGTGATGAGGACG-GCTGGT--TCT--AGG-GA
* * *
53590 TAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGT
1 TGACACGGTTCCTACGTGATGAGGACGGCTGG-T-TCTAGGGA
*
53633 TGACACGGCTCCTACGTGATGAGGA-GGTCTGG-TCT-GGGA
1 TGACACGGTTCCTACGTGATGAGGACGG-CTGGTTCTAGGGA
53672 TGACACGGTTCCTACGTGATGAGGACGGCTGG
1 TGACACGGTTCCTACGTGATGAGGACGGCTGG
53704 CCATCTTTAG
Statistics
Matches: 133, Mismatches: 16, Indels: 23
0.77 0.09 0.13
Matches are distributed among these distances:
39 30 0.23
40 33 0.25
42 2 0.02
43 30 0.23
44 2 0.02
45 2 0.02
46 32 0.24
47 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (41 bp):
TGACACGGTTCCTACGTGATGAGGACGGCTGGTTCTAGGGA
Found at i:53996 original size:100 final size:101
Alignment explanation
Indices: 53821--54002 Score: 249
Period size: 100 Copynumber: 1.8 Consensus size: 101
53811 TCGAGAGAAG
* * * * * *
53821 CAAAATTTTGTTTCCAAAGAAAGAGATTCAATGATTTTTTTTTAAAAGACATTGTCATAAGAGAC
1 CAAAATTTTGTTTCCAAAGAAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGAC
* *
53886 AAAACTTTGTTTTCAGAAAATTGTATCTTAGTGAGA
66 AAAACCTTGTTTCCAGAAAATTGTATCTTAGTGAGA
** * *
53922 CAAAATTTTGTTTCCAAAG-AACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTTTTAAGGGAT
1 CAAAATTTTGTTTCCAAAGAAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGAC
53986 AAAACCTTGTTTCCAGA
66 AAAACCTTGTTTCCAGA
54003 GAAACAGACT
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
100 50 0.72
101 19 0.28
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (101 bp):
CAAAATTTTGTTTCCAAAGAAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGAC
AAAACCTTGTTTCCAGAAAATTGTATCTTAGTGAGA
Found at i:54542 original size:27 final size:27
Alignment explanation
Indices: 54489--54567 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
54479 TGTTAAGAGA
54489 AACAAACTCAAAGATATTTATTCAAAAGG
1 AACAAACTCAAAGAT-TTT-TTCAAAAGG
*
54518 AACAAACTCCAAGATTTTTTCAAAAGG
1 AACAAACTCAAAGATTTTTTCAAAAGG
54545 AACAAACTCAAAGATTTTTTCAA
1 AACAAACTCAAAGATTTTTTCAA
54568 GAGAAACTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 31 0.65
28 3 0.06
29 14 0.29
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (27 bp):
AACAAACTCAAAGATTTTTTCAAAAGG
Found at i:54582 original size:27 final size:27
Alignment explanation
Indices: 54454--54574 Score: 125
Period size: 27 Copynumber: 4.3 Consensus size: 27
54444 TTTGTTTTTT
* * *
54454 AAAGAAATAGACTCAAAGATGATTTTGTTA
1 AAAGAAACAAACTCAAAGAT--TTTT-TCA
*
54484 AGAGAAACAAACTCAAAGATATTTATTCA
1 AAAGAAACAAACTCAAAGAT-TTT-TTCA
* *
54513 AAAGGAACAAACTCCAAGATTTTTTCA
1 AAAGAAACAAACTCAAAGATTTTTTCA
*
54540 AAAGGAACAAACTCAAAGATTTTTTCA
1 AAAGAAACAAACTCAAAGATTTTTTCA
*
54567 AGAGAAAC
1 AAAGAAAC
54575 TGTCTCAAGA
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
27 36 0.45
28 3 0.04
29 23 0.29
30 18 0.22
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (27 bp):
AAAGAAACAAACTCAAAGATTTTTTCA
Found at i:54900 original size:36 final size:36
Alignment explanation
Indices: 54816--54919 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
54806 GAGAAAATGA
* * *
54816 TGTCTCAAGCGAGACGAAATTTG-CTTTA-AGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
* **
54850 AGTCTCAAATGAGACAAAATTTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
*
54886 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAA
54920 ACGATCTCAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 19 0.33
35 10 0.17
36 29 0.50
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
Found at i:55439 original size:4 final size:4
Alignment explanation
Indices: 55423--55468 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
55413 ATGCAAATTT
*
55423 TATG TAT- TATG TATG TATG --TG TATA TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
55468 T
1 T
55469 TTTCTCGATC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 3 0.08
4 32 0.86
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:55453 original size:18 final size:17
Alignment explanation
Indices: 55425--55460 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
55415 GCAAATTTTA
55425 TGTATTATGTATGTATG
1 TGTATTATGTATGTATG
55442 TGTATATATGTATGTATG
1 TGTAT-TATGTATGTATG
55460 T
1 T
55461 ATGTATGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (17 bp):
TGTATTATGTATGTATG
Found at i:63003 original size:3 final size:3
Alignment explanation
Indices: 62983--63052 Score: 63
Period size: 3 Copynumber: 22.3 Consensus size: 3
62973 ATGTAAAAAT
* *
62983 ATA ATA TTA ATAA ATA ATA AT- ATA A-A TATA AAA ATA ATA ATA ATAA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA AT-A
63029 ATA TATAA ATA ATA ATA ATA ATA A
1 ATA -AT-A ATA ATA ATA ATA ATA A
63053 AATTAAAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
2 3 0.05
3 41 0.73
4 11 0.20
5 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:63004 original size:21 final size:21
Alignment explanation
Indices: 62983--63049 Score: 86
Period size: 21 Copynumber: 3.2 Consensus size: 21
62973 ATGTAAAAAT
62983 ATAATATTAATAAATAATAAT-
1 ATAA-ATTAATAAATAATAATA
63004 ATAAATATAA-AAATAATAATA
1 ATAAAT-TAATAAATAATAATA
63025 ATAAA-TATATAAATAATAATA
1 ATAAATTA-ATAAATAATAATA
63046 ATAA
1 ATAA
63050 TAAAATTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.05
20 13 0.31
21 27 0.64
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAAATTAATAAATAATAATA
Found at i:63010 original size:27 final size:23
Alignment explanation
Indices: 62978--63059 Score: 105
Period size: 23 Copynumber: 3.4 Consensus size: 23
62968 AAAATATGTA
62978 AAAATATAATATTAATAAATAATAAT
1 AAAATATAA-A-TAAT-AATAATAAT
63004 ATAAATATAAA-AATAATAATAAT
1 A-AAATATAAATAATAATAATAAT
63027 AAATATATAAATAATAATAATAAT
1 AAA-ATATAAATAATAATAATAAT
63051 AAAAT-TAAA
1 AAAATATAAA
63060 ATTAAATAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.11
23 19 0.36
24 18 0.34
26 2 0.04
27 8 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
AAAATATAAATAATAATAATAAT
Found at i:63039 original size:15 final size:15
Alignment explanation
Indices: 62969--63043 Score: 63
Period size: 15 Copynumber: 5.1 Consensus size: 15
62959 TGGCCTGCCA
*
62969 AAATATGTAAA-AAT
1 AAATATATAAATAAT
62983 ATAATATTAATAAATAAT
1 A-AATA-T-ATAAATAAT
63001 -AATATA-AATATAA-
1 AAATATATAA-ATAAT
63014 AAATA-AT-AATAAT
1 AAATATATAAATAAT
63027 AAATATATAAATAAT
1 AAATATATAAATAAT
63042 AA
1 AA
63044 TAATAATAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 19
0.71 0.01 0.27
Matches are distributed among these distances:
12 4 0.08
13 9 0.18
14 12 0.24
15 13 0.26
16 5 0.10
17 4 0.08
18 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (15 bp):
AAATATATAAATAAT
Found at i:73790 original size:44 final size:44
Alignment explanation
Indices: 73742--73829 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
73732 AAAATACCTC
73742 GATATCGATACTCTTATGGTATCGATACTCCCATAAGTACCGAT
1 GATATCGATACTCTTATGGTATCGATACTCCCATAAGTACCGAT
73786 GATATCGATACTCTTATGGTATCGATACTCCCATAAGTACCGAT
1 GATATCGATACTCTTATGGTATCGATACTCCCATAAGTACCGAT
73830 ACCAAAATGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
GATATCGATACTCTTATGGTATCGATACTCCCATAAGTACCGAT
Found at i:76539 original size:21 final size:21
Alignment explanation
Indices: 76513--76557 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76503 GATTTCTGGG
* *
76513 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
76534 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
76555 CAA
1 CAA
76558 ACGAACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:78081 original size:149 final size:149
Alignment explanation
Indices: 77901--78215 Score: 605
Period size: 149 Copynumber: 2.1 Consensus size: 149
77891 GAGTCGAGGG
*
77901 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAATACACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
77966 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
78031 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
78050 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
78115 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
78180 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
78199 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
78216 TGCAATTATA
Statistics
Matches: 164, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
148 1 0.01
149 163 0.99
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:78216 original size:23 final size:23
Alignment explanation
Indices: 78183--78227 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
78173 ATCATTATAT
*
78183 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
78206 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
78228 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:81124 original size:19 final size:19
Alignment explanation
Indices: 81100--81150 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
81090 CGGTCACATG
* *
81100 TCGTATTTAGAATTCATTT
1 TCGTATTCAAAATTCATTT
81119 TCGTATTCAAAATTCATTT
1 TCGTATTCAAAATTCATTT
*
81138 TCATATTCAAAAT
1 TCGTATTCAAAAT
81151 GCAGTCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (19 bp):
TCGTATTCAAAATTCATTT
Found at i:82198 original size:14 final size:14
Alignment explanation
Indices: 82179--82219 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
82169 TTAGATTTTT
82179 TTAAAATTACATTA
1 TTAAAATTACATTA
82193 TTAAAATT--A-TA
1 TTAAAATTACATTA
*
82204 TTAAAAATACATTA
1 TTAAAATTACATTA
82218 TT
1 TT
82220 GATAATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 1 0.04
14 12 0.52
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAAATTACATTA
Found at i:82207 original size:25 final size:26
Alignment explanation
Indices: 82179--82229 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
82169 TTAGATTTTT
*
82179 TTAAAATTACATTATT-AAAATTATA
1 TTAAAAATACATTATTGAAAATTATA
*
82204 TTAAAAATACATTATTGATAATTATA
1 TTAAAAATACATTATTGAAAATTATA
82230 AAATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (26 bp):
TTAAAAATACATTATTGAAAATTATA
Found at i:84326 original size:86 final size:86
Alignment explanation
Indices: 84228--84494 Score: 236
Period size: 86 Copynumber: 3.1 Consensus size: 86
84218 AAATTTATCT
84228 TTAAACTATTTTAGATTTACAAAAAAAAATCTATAATTAAAATTTTATATGAAGTTCAAGGGTTA
1 TTAAACTATTTTAGATTTACAAAAAAAAATCTATAATTAAAATTTTATATGAAGTTCAAGGGTTA
84293 AAATAAAATTTTATCCTTTCA
66 AAATAAAATTTTATCCTTTCA
* * ** *
84314 TTAAACCT-TTTTATATTTTCAATTTTGTAAAAAAAAT-TAT-A-T-AAATTTTATGAAAAAAAT
1 TTAAA-CTATTTTAGATTTAC-A------AAAAAAAATCTATAATTAAAATTTTAT--ATGAAGT
*
84374 TCTTTGAA-GGTTAAATTATAAA-TTTAT-C---C-
56 TC----AAGGGTTAAAATA-AAATTTTATCCTTTCA
*
84403 TTAAACTATTTTAGATTTACAAAAAAAAATCTATAATTAAAATTTTATATGAAGTTAAAGGGTTA
1 TTAAACTATTTTAGATTTACAAAAAAAAATCTATAATTAAAATTTTATATGAAGTTCAAGGGTTA
84468 AAATAAAATTTTA-CCATTTCA
66 AAATAAAATTTTATCC-TTTCA
84489 TTAAAC
1 TTAAAC
84495 CTTTTTATAT
Statistics
Matches: 140, Mismatches: 13, Indels: 56
0.67 0.06 0.27
Matches are distributed among these distances:
80 5 0.04
81 14 0.10
82 9 0.06
83 3 0.02
84 6 0.04
85 2 0.01
86 30 0.21
87 3 0.02
88 3 0.02
89 24 0.17
90 2 0.01
91 7 0.05
92 3 0.02
93 10 0.07
94 14 0.10
95 5 0.04
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.41
Consensus pattern (86 bp):
TTAAACTATTTTAGATTTACAAAAAAAAATCTATAATTAAAATTTTATATGAAGTTCAAGGGTTA
AAATAAAATTTTATCCTTTCA
Found at i:84490 original size:175 final size:175
Alignment explanation
Indices: 84193--84542 Score: 639
Period size: 175 Copynumber: 2.0 Consensus size: 175
84183 ATTGAATAAT
* *
84193 AAAAATTATATGAAGGTTAAATTGTAAATTTATCTTTAAACTATTTTAGATTTACAAAAAAAAAT
1 AAAAATTATATGAAGGTTAAATTATAAATTTATCCTTAAACTATTTTAGATTTACAAAAAAAAAT
*
84258 CTATAATTAAAATTTTATATGAAGTTCAAGGGTTAAAATAAAATTTTATCCTTTCATTAAACCTT
66 CTATAATTAAAATTTTATATGAAGTTAAAGGGTTAAAATAAAATTTTATCCTTTCATTAAACCTT
84323 TTTATATTTTCAATTTTGTAAAAAAAATTATATAAATTTTATGAA
131 TTTATATTTTCAATTTTGTAAAAAAAATTATATAAATTTTATGAA
* *
84368 AAAAATTCTTTGAAGGTTAAATTATAAATTTATCCTTAAACTATTTTAGATTTACAAAAAAAAAT
1 AAAAATTATATGAAGGTTAAATTATAAATTTATCCTTAAACTATTTTAGATTTACAAAAAAAAAT
84433 CTATAATTAAAATTTTATATGAAGTTAAAGGGTTAAAATAAAATTTTA-CCATTTCATTAAACCT
66 CTATAATTAAAATTTTATATGAAGTTAAAGGGTTAAAATAAAATTTTATCC-TTTCATTAAACCT
84497 TTTTATATTTTCAATTTTGTAAAAAAAATTATATAAATTTTATGAA
130 TTTTATATTTTCAATTTTGTAAAAAAAATTATATAAATTTTATGAA
84543 TTTAATTTTT
Statistics
Matches: 169, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
174 2 0.01
175 167 0.99
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.42
Consensus pattern (175 bp):
AAAAATTATATGAAGGTTAAATTATAAATTTATCCTTAAACTATTTTAGATTTACAAAAAAAAAT
CTATAATTAAAATTTTATATGAAGTTAAAGGGTTAAAATAAAATTTTATCCTTTCATTAAACCTT
TTTATATTTTCAATTTTGTAAAAAAAATTATATAAATTTTATGAA
Found at i:86127 original size:12 final size:12
Alignment explanation
Indices: 86110--86146 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
86100 ATTAAGTATC
86110 AAAATCATTTAA
1 AAAATCATTTAA
86122 AAAATCATTTAA
1 AAAATCATTTAA
*
86134 AAAATAATTTAA
1 AAAATCATTTAA
86146 A
1 A
86147 CAATTATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATCATTTAA
Found at i:89105 original size:13 final size:13
Alignment explanation
Indices: 89087--89114 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
89077 TGAATAGGTG
89087 TTGTGTAACCTTA
1 TTGTGTAACCTTA
89100 TTGTGTAACCTTA
1 TTGTGTAACCTTA
89113 TT
1 TT
89115 CAAATGTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (13 bp):
TTGTGTAACCTTA
Found at i:93846 original size:46 final size:46
Alignment explanation
Indices: 93770--93860 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
93760 CATCCTTTAT
* *
93770 AACTTAGGTATATTATTATACAACCTGTTTGTTACTTCCCCAGGCG
1 AACTTAGGTATATTATTATACAACCCGTTTGCTACTTCCCCAGGCG
* *
93816 AACTTAGGTATATTATTGTATAACCCGTTTGCTACTTCCCCAGGC
1 AACTTAGGTATATTATTATACAACCCGTTTGCTACTTCCCCAGGC
93861 TGATGTTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.36
Consensus pattern (46 bp):
AACTTAGGTATATTATTATACAACCCGTTTGCTACTTCCCCAGGCG
Found at i:94468 original size:56 final size:56
Alignment explanation
Indices: 94382--94488 Score: 187
Period size: 56 Copynumber: 1.9 Consensus size: 56
94372 CTGCTGGCCC
* *
94382 AAATTCAACCCTCCACTGGGTTGTTGATTTACATTTTCTTTGTTATGACGACAATG
1 AAATTCAACCCTCCACTGGGTTGTTGATTTACATTTTCTCTGTAATGACGACAATG
*
94438 AAATTCAACCCTCCACTGGGTTGTTGATTTATATTTTCTCTGTAATGACGA
1 AAATTCAACCCTCCACTGGGTTGTTGATTTACATTTTCTCTGTAATGACGA
94489 GAAACAGTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (56 bp):
AAATTCAACCCTCCACTGGGTTGTTGATTTACATTTTCTCTGTAATGACGACAATG
Done.