genome.fa.s5814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005814.1 Hibiscus syriacus cultivar Beakdansim tig00013627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148173

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6984--7017	2	17.0	2	100	0	68	50	0	0	50	1.00
7503--7554	24	2.2	24	86	6	70	32	5	0	61	1.20
11951--12008	8	6.9	8	82	7	62	75	0	17	6	1.01
11941--12009	8	7.9	8	77	17	57	76	0	15	7	0.99
16654--16705	19	2.6	19	84	9	68	36	11	15	36	1.84
17369--17793	45	9.6	45	89	3	648	24	23	19	32	1.98
17369--17775	174	2.3	174	91	3	645	24	23	19	33	1.97
17967--18025	3	19.0	3	96	3	100	35	0	0	64	0.94
19289--19322	14	2.4	15	90	9	54	26	2	0	70	1.01
21069--21117	19	2.7	18	81	6	55	77	2	2	18	0.96
22321--22363	22	2.0	22	100	0	86	25	0	23	51	1.49
22687--23031	121	2.9	121	89	0	537	22	20	26	30	1.98
23105--23214	34	3.3	34	67	10	100	23	18	26	31	1.97
23071--23212	66	2.2	66	97	0	266	22	20	26	30	1.98
23073--23178	32	3.2	32	66	10	97	22	20	27	29	1.99
22936--23336	190	2.1	190	88	0	586	24	19	25	30	1.98
23131--23590	124	3.7	124	93	0	742	25	18	24	31	1.98
25269--25321	19	2.8	19	82	2	72	1	11	7	79	1.01
25258--25338	11	6.8	11	76	14	63	2	13	4	79	1.01
25269--25330	19	3.3	19	78	14	67	1	12	6	79	1.00
25248--25352	12	8.6	12	72	22	53	1	15	5	77	1.05
25289--25352	17	3.6	17	81	10	67	1	15	4	78	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32268--32605	124	2.7	123	88	5	477	25	15	24	34	1.95
33212--33273	31	2.0	31	96	0	115	22	14	38	24	1.91
33277--33328	22	2.4	22	96	3	97	21	30	34	13	1.92
33374--33441	29	2.3	29	82	0	91	17	33	32	16	1.92
35539--35578	15	2.4	18	80	12	50	0	25	5	70	1.08
37064--37135	25	2.8	26	85	10	94	41	1	12	44	1.51
37047--37134	27	3.3	26	78	13	90	40	1	13	44	1.51
37091--37281	29	6.6	29	76	10	151	38	5	8	47	1.58
37115--37252	58	2.4	59	85	1	188	39	5	7	47	1.57
45148--45292	35	4.1	36	83	7	156	41	18	5	34	1.74
45197--45257	21	3.2	21	65	29	64	42	21	4	31	1.74
49219--49254	12	3.0	12	95	0	63	41	22	16	19	1.90
49647--49755	35	3.0	36	91	5	175	44	19	5	30	1.73
49687--49747	21	3.2	21	65	29	64	42	21	4	31	1.74
49654--49782	35	3.6	36	85	9	142	41	18	6	32	1.77
51874--51925	25	2.1	25	85	7	70	21	15	9	53	1.70
56399--56451	12	4.7	12	86	9	76	77	5	0	16	0.96
56447--56487	13	3.2	13	83	16	50	51	0	4	43	1.23
56645--56702	25	2.4	24	85	8	82	44	5	3	46	1.42
56690--56750	12	5.0	12	71	11	52	40	4	6	47	1.51
56667--56924	37	7.0	37	88	3	335	43	8	4	43	1.56
56606--56738	60	2.2	61	86	1	178	39	6	7	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56597--56775	97	1.9	96	88	3	270	39	6	6	46	1.56
56667--56925	112	2.3	111	82	5	328	43	8	4	43	1.56
56667--56924	75	3.5	71	84	5	291	43	8	4	43	1.56
65383--65419	2	18.5	2	100	0	74	51	0	0	48	1.00
69882--69926	2	22.5	2	100	0	90	48	0	0	51	1.00
77051--77091	8	5.2	8	82	5	57	34	0	29	36	1.58
77162--77793	128	4.9	128	94	1	1061	23	24	20	32	1.98
78156--78489	167	2.0	165	97	2	625	35	26	10	28	1.89
79220--79249	15	2.0	15	93	0	51	46	16	6	30	1.73
79376--79473	34	2.9	34	83	1	126	37	3	4	55	1.35
79995--80064	21	3.3	20	90	5	95	18	27	35	18	1.94
80068--80115	21	2.3	21	85	0	60	22	12	39	25	1.89
81844--81928	32	2.6	32	79	5	89	58	2	0	38	1.11
81844--81919	35	2.3	34	81	6	93	60	1	0	38	1.05
81872--81949	34	2.3	34	80	10	88	64	5	0	30	1.15
82121--82223	50	2.1	50	88	0	152	20	30	33	16	1.95
84682--84708	5	5.4	5	100	0	54	0	18	0	81	0.69
89463--89515	27	2.0	27	92	0	88	58	7	5	28	1.48
89671--89728	23	2.6	23	71	15	59	29	6	17	46	1.74
95692--95716	9	2.8	9	100	0	50	56	0	0	44	0.99
109575--109631	24	2.4	24	100	0	114	17	36	21	24	1.94
118969--119031	31	2.0	31	96	0	117	25	12	23	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119909--119962	11	4.8	11	76	23	51	38	1	0	59	1.08
134593--134629	14	2.6	14	100	0	74	10	43	0	45	1.39
134587--134630	14	2.9	16	83	13	65	13	43	0	43	1.44
139883--139964	30	2.7	30	86	0	101	23	26	17	32	1.96
140679--140753	21	3.6	21	94	0	123	29	22	24	24	1.99
140762--140896	21	6.6	21	76	11	127	22	21	23	31	1.98
140777--140924	41	3.6	41	82	10	178	25	20	20	33	1.97
141014--141051	6	6.5	6	96	3	69	31	52	15	0	1.43
141645--141865	42	5.3	42	91	0	352	36	23	19	21	1.95
146190--146283	20	4.7	20	80	7	91	34	25	15	24	1.95
146187--146264	41	1.9	41	89	0	120	38	23	15	23	1.92
146465--146508	22	2.0	22	95	0	79	20	45	15	18	1.85
148013--148056	17	2.5	18	85	3	63	27	45	15	11	1.81

Tables:   1

The End!