genome.fa.s5815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005815.1 Hibiscus syriacus cultivar Beakdansim tig00013628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55939

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3586--3857	45	6.0	45	87	2	366	26	21	13	38	1.90
3586--3857	135	2.0	136	90	5	426	26	21	13	38	1.90
10587--10910	45	7.2	45	84	1	400	24	20	12	42	1.87
10587--10910	89	3.6	90	86	3	420	24	20	12	42	1.87
10587--10910	134	2.4	134	84	3	409	24	20	12	42	1.87
18202--18508	54	5.7	54	83	5	390	28	17	21	32	1.96
18202--18508	108	2.8	109	88	1	449	28	17	21	32	1.96
18202--18508	161	1.9	162	86	2	438	28	17	21	32	1.96
23421--23786	54	6.8	54	87	1	511	27	19	20	33	1.96
23421--23786	161	2.3	162	88	0	527	27	19	20	33	1.96
26289--26382	42	2.2	42	81	5	100	28	22	13	35	1.92
26233--26694	241	1.9	241	88	1	694	31	16	17	34	1.92
26732--26844	42	2.7	42	80	2	120	25	18	19	36	1.95
26467--26915	221	2.0	224	88	3	665	30	15	17	36	1.91
26992--27043	20	2.6	20	90	0	86	21	21	25	32	1.98
27212--27581	197	1.9	196	87	2	546	31	19	17	31	1.95
31835--32140	44	7.0	44	88	0	423	42	11	22	24	1.85
33678--33730	7	8.2	6	87	8	61	79	0	0	20	0.74
33677--33753	4	20.8	4	74	19	60	75	2	0	22	0.93
33677--33753	17	4.4	17	87	8	102	75	2	0	22	0.93
34302--34783	200	2.4	200	82	2	511	26	19	20	34	1.96
36343--36393	23	2.2	23	96	0	93	29	13	29	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42634--42659	2	13.0	2	100	0	52	50	0	0	50	1.00
44219--44247	10	2.9	10	100	0	58	72	17	0	10	1.11
44577--44614	19	2.1	19	90	5	60	5	10	13	71	1.30
47252--47285	16	2.1	17	88	5	52	41	2	17	38	1.65
50008--50236	112	2.1	111	89	2	352	34	18	16	29	1.93

Tables:   1

The End!