Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005818.1 Hibiscus syriacus cultivar Beakdansim tig00013635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142730

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1535--1592
24
2.5
24
80
2
64
58
1
0
39
1.08
14429--14527
32
3.4
27
80
14
117
15
9
34
41
1.78
14457--14534
32
2.4
32
91
2
129
14
10
35
39
1.80
15071--15104
15
2.3
15
89
0
50
26
20
2
50
1.63
19336--19367
16
2.0
16
100
0
64
6
12
12
68
1.37
22212--22310
23
4.3
23
80
3
101
61
19
8
11
1.53
22930--22974
2
22.5
2
100
0
90
48
0
0
51
1.00
24316--24411
29
3.3
29
88
1
140
36
22
8
32
1.84
24316--24424
29
3.8
29
86
1
139
37
24
7
30
1.83
24441--24481
13
3.2
13
92
0
73
17
24
41
17
1.89
30430--30472
13
3.2
13
86
3
50
51
6
2
39
1.42
30710--30742
15
2.2
15
89
10
50
48
12
18
21
1.80
36538--36595
29
2.0
29
83
6
73
48
5
0
46
1.24
64407--64462
29
1.9
29
82
7
69
53
1
0
44
1.11
66358--66464
52
2.0
54
85
7
148
20
21
16
41
1.91
70939--71045
52
2.0
54
87
3
155
21
21
14
42
1.89
71161--71200
14
2.8
14
84
3
53
37
0
2
60
1.11
72815--72861
18
2.5
19
74
16
53
72
4
2
21
1.12
78192--78245
24
2.2
24
96
0
99
46
33
18
1
1.60
80294--80331
20
1.9
20
88
0
58
26
26
5
42
1.76
81529--81588
29
2.1
29
100
0
120
30
16
10
43
1.81
100746--100825
15
5.4
15
84
3
108
38
6
18
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100746--100825
30
2.7
30
92
1
126
38
6
18
36
1.76
100808--100876
20
3.5
20
95
0
129
39
10
14
36
1.80
101034--101088
28
1.9
29
88
3
85
50
1
1
45
1.22
101062--101098
19
1.9
19
88
0
56
56
0
0
43
0.99
101034--101111
28
2.8
28
79
16
83
53
1
1
43
1.16
101103--101183
20
4.0
20
75
21
71
46
1
1
50
1.17
101101--101182
22
3.6
22
74
21
80
48
1
1
48
1.17
101368--101470
38
2.6
40
88
8
149
40
18
21
19
1.91
103721--103802
40
2.0
40
100
0
164
39
7
29
24
1.82
106306--106351
3
15.0
3
95
4
83
34
0
0
65
0.93
107640--107703
20
3.6
20
67
30
63
37
6
9
46
1.61
107638--107703
32
2.1
32
100
0
132
37
6
9
46
1.60
107742--107803
14
4.4
14
87
0
97
38
4
0
56
1.21
107742--107803
28
2.2
28
97
0
115
38
4
0
56
1.21
109856--109910
22
2.4
24
76
17
62
63
0
1
34
1.05
109878--109906
15
1.9
15
100
0
58
68
0
0
31
0.89
114832--114871
2
20.0
2
94
0
71
47
2
0
50
1.14
115641--115689
20
2.4
21
80
10
57
40
2
6
51
1.38
116135--116244
4
25.8
4
72
12
67
28
3
4
63
1.31
116165--116244
34
2.4
34
86
0
106
31
3
5
60
1.36
120003--120064
21
2.7
23
80
11
83
27
17
19
35
1.94
137160--137195
19
1.9
19
88
5
56
55
13
5
25
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137680--137745
28
2.4
28
82
10
73
56
15
10
18
1.67

Tables:   1

The End!