Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000582.1 Hibiscus syriacus cultivar Beakdansim tig00001137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52774

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2477--2520
19
2.3
19
96
0
79
36
9
25
29
1.86
3910--3984
27
3.0
25
76
7
73
54
1
0
44
1.08
3918--4005
35
2.4
39
85
11
114
57
1
1
39
1.13
7013--7078
23
2.9
24
82
8
84
50
16
19
13
1.78
12311--12858
302
1.8
300
89
3
868
43
5
7
43
1.56
13521--13576
28
2.0
29
89
6
89
26
0
8
64
1.23
15907--16488
84
7.1
82
82
5
674
30
25
20
23
1.98
15863--16563
164
4.3
164
86
2
911
29
25
20
24
1.99
15863--16563
332
2.1
327
86
1
972
29
25
20
24
1.99
17108--17294
39
5.0
35
77
14
153
44
5
8
40
1.59
17274--17298
11
2.3
11
100
0
50
40
8
8
44
1.63
17327--17376
25
2.0
26
84
4
66
48
0
2
50
1.12
17135--17419
38
7.4
38
75
13
244
46
3
6
43
1.45
17788--17859
26
2.8
26
81
10
69
26
4
1
68
1.16
22798--23472
84
8.2
82
78
5
628
29
25
20
23
1.99
22798--23482
164
4.2
164
86
2
897
29
25
20
23
1.99
22798--23482
332
2.1
327
86
1
949
29
25
20
23
1.99
24025--24205
38
4.7
36
75
14
125
45
5
8
40
1.57
24066--24317
38
7.0
37
71
18
140
46
3
6
43
1.45
24169--24229
27
2.3
26
86
5
79
42
3
8
45
1.50
24110--24304
104
1.9
102
87
4
284
46
3
6
44
1.45
24149--24273
66
1.9
65
86
4
180
44
3
5
47
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24208--24329
36
3.2
38
77
5
131
45
1
4
47
1.34
24194--24324
36
3.5
37
75
13
124
45
2
5
47
1.38
25594--25630
2
18.5
2
100
0
74
48
0
0
51
1.00
27726--27771
15
3.1
15
84
9
51
73
0
4
21
1.00
27791--28037
38
6.7
36
79
9
223
46
6
3
44
1.44
27835--28077
36
6.5
36
79
10
213
46
6
3
43
1.47
27835--28077
111
2.2
110
81
12
273
46
6
3
43
1.47
36892--36925
14
2.4
14
86
13
52
26
0
17
55
1.42
37052--37102
26
1.9
26
84
11
68
39
0
9
50
1.35
38809--38850
17
2.4
18
84
8
59
54
2
0
42
1.13
41891--41944
24
2.2
24
100
0
108
59
0
16
24
1.37
47198--47646
229
2.0
227
94
0
790
45
7
7
39
1.61
47712--47757
20
2.3
19
89
10
74
54
10
17
17
1.70
47886--47928
20
2.3
19
88
11
63
51
11
16
20
1.75
50232--50297
33
2.0
33
87
0
96
28
1
45
24
1.62
52066--52113
19
2.6
19
90
3
71
31
2
10
56
1.45
52230--52774
193
2.8
195
93
4
920
37
16
16
30
1.90

Tables:   1

The End!