genome.fa.s5820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005820.1 Hibiscus syriacus cultivar Beakdansim tig00013637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123224

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6988--7150	65	2.5	64	84	3	220	27	15	26	30	1.96
7098--7148	19	2.7	19	85	8	70	25	15	35	23	1.94
6992--7199	65	3.2	65	81	12	207	27	17	25	29	1.97
12072--12118	20	2.2	21	78	17	53	44	6	12	36	1.68
14185--14347	65	2.5	65	83	1	211	27	15	26	30	1.96
14295--14345	19	2.7	19	79	8	61	25	13	35	25	1.93
14189--14396	65	3.2	63	78	13	192	27	16	25	30	1.97
14837--14875	13	2.9	13	80	3	51	35	0	12	51	1.40
20154--20227	37	2.0	37	89	0	112	45	10	6	36	1.66
22901--22933	2	16.5	2	100	0	66	48	0	0	51	1.00
30142--30176	12	3.0	11	84	15	52	34	2	0	62	1.10
30678--30735	2	29.0	2	100	0	116	50	0	0	50	1.00
31054--31589	271	2.0	268	89	1	831	39	8	11	40	1.72
40630--40681	6	8.0	6	80	16	59	13	0	3	82	0.80
40632--40681	21	2.5	19	87	6	73	12	0	4	84	0.76
40632--40692	27	2.1	31	88	11	94	11	0	6	81	0.85
40628--40681	13	4.0	14	81	13	60	14	0	3	81	0.82
40632--40688	12	4.4	13	79	12	64	12	0	5	82	0.82
45807--45876	3	23.3	3	100	0	140	32	0	0	67	0.91
47319--47355	19	1.9	19	100	0	74	16	13	43	27	1.85
56293--56355	3	20.0	3	93	6	99	66	0	33	0	0.92
58536--58611	13	5.8	13	80	14	77	23	1	0	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58539--58579	4	9.5	4	89	10	55	26	0	0	73	0.84
58555--58611	25	2.5	22	74	20	53	21	1	0	77	0.86
58539--58605	35	2.0	35	85	11	95	23	1	0	74	0.90
58538--58610	12	5.5	13	76	16	71	23	1	0	75	0.88
58660--58746	33	2.6	33	87	5	122	40	19	11	28	1.86
59010--59040	12	2.5	12	94	5	53	16	3	0	80	0.83
63110--63472	106	3.4	105	84	4	492	33	23	19	23	1.97
63216--63454	110	2.2	110	86	4	335	34	24	17	23	1.96
63058--63472	216	1.9	212	90	2	661	33	23	19	23	1.97
63979--64034	2	29.0	2	92	7	98	50	0	0	50	1.00
65638--65736	46	2.1	46	98	1	189	41	18	14	26	1.88
67953--68024	34	2.1	34	94	0	126	43	13	22	20	1.87
68742--68824	2	41.5	2	100	0	166	49	0	0	50	1.00
69194--69231	18	2.1	18	95	0	67	39	5	23	31	1.77
69224--69358	60	2.2	60	84	2	164	40	5	21	33	1.76
69691--69758	18	3.9	18	81	7	79	75	2	22	0	0.94
69692--69743	6	8.7	6	95	0	68	75	0	25	0	0.81
69693--69763	15	4.2	16	75	19	65	77	2	19	0	0.89
84732--84800	20	3.5	20	87	0	93	31	11	28	27	1.92
84732--84812	20	4.1	20	86	0	90	30	13	25	29	1.94
85782--85822	3	13.7	3	100	0	82	68	0	31	0	0.90
86404--86486	10	7.6	10	76	17	76	57	19	10	12	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86414--86523	24	4.7	23	77	7	114	56	19	11	12	1.66
88314--88355	16	2.6	16	84	0	57	73	2	2	21	1.06
96274--96369	48	2.0	49	89	2	149	33	10	10	45	1.72
98889--99034	73	2.0	73	100	0	292	49	6	13	30	1.68
99707--99773	5	13.8	5	69	12	50	71	1	2	23	1.08
99735--99773	20	2.0	20	100	0	78	71	0	2	25	0.98
102341--102384	3	14.7	3	100	0	88	68	0	0	31	0.90
103266--103353	24	3.7	24	72	4	70	52	18	15	13	1.75
103278--103352	34	2.2	34	87	0	114	52	20	14	13	1.75
110690--110731	21	2.0	21	95	0	75	30	14	7	47	1.71
110726--110824	33	3.0	32	91	4	153	33	7	14	45	1.71
111518--111557	21	1.9	21	100	0	80	20	25	35	20	1.96
111945--111978	18	1.9	18	94	5	61	38	11	11	38	1.79
112072--112103	16	2.0	17	88	11	50	43	21	21	12	1.86
112077--112129	21	2.5	21	100	0	106	33	24	26	15	1.95
115129--115416	117	2.4	118	92	2	470	40	19	9	30	1.83
118534--118619	40	2.2	40	89	6	131	38	6	5	48	1.54

Tables:   1

The End!