Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005821.1 Hibiscus syriacus cultivar Beakdansim tig00013638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71181

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4630--4666
19
1.9
19
100
0
74
54
8
16
21
1.68
6293--6343
22
2.2
24
86
10
79
33
3
1
60
1.26
6299--6342
22
2.0
23
95
4
81
29
4
2
63
1.26
6752--6827
38
2.0
39
92
2
127
47
10
10
31
1.72
8177--8215
20
2.0
20
94
0
69
43
2
5
48
1.38
18388--18428
2
20.5
2
100
0
82
48
0
0
51
1.00
19724--19786
30
2.1
30
93
0
108
49
7
14
28
1.71
27811--27904
24
3.9
24
82
0
98
40
17
17
25
1.90
30038--30087
25
2.0
24
84
3
64
28
18
34
20
1.95
46514--46561
24
2.0
24
100
0
96
29
16
29
25
1.97
46512--46570
24
2.6
22
85
12
84
30
15
27
27
1.96
55617--56264
322
2.0
321
90
2
1007
44
8
14
32
1.76
56548--56856
2
154.0
2
67
19
137
49
3
6
41
1.45
56863--57244
14
25.9
15
71
20
204
53
2
7
35
1.45
56861--57244
22
17.3
21
72
21
165
53
2
7
35
1.45
56984--57130
57
2.6
57
95
4
262
53
2
7
36
1.44
56993--57234
65
3.9
63
84
10
263
54
2
6
36
1.42
56870--57246
65
6.1
60
77
14
251
53
2
7
36
1.44
57794--58108
162
1.9
162
83
3
400
27
32
5
33
1.81
58240--58265
3
8.7
3
100
0
52
0
34
0
65
0.93
60254--60294
21
1.9
22
85
5
57
26
2
4
65
1.25
64915--65033
54
2.2
54
92
0
193
31
23
21
22
1.98

Tables:   1

The End!