genome.fa.s5824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005824.1 Hibiscus syriacus cultivar Beakdansim tig00013646_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69911

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--101	47	2.0	47	84	6	122	38	12	7	41	1.71
1137--1186	2	25.5	2	83	4	66	0	56	0	44	0.99
2038--2377	156	2.2	157	87	5	492	28	17	7	47	1.73
5465--5528	29	2.3	27	86	5	83	23	7	10	57	1.58
5553--5589	11	3.5	11	82	14	51	43	0	13	43	1.44
7959--7994	3	11.7	3	94	5	63	33	0	30	36	1.58
8190--8524	67	5.0	68	84	7	447	28	12	10	48	1.74
8238--8361	37	3.6	36	68	20	102	28	12	12	47	1.76
8275--8378	30	3.2	30	67	22	84	26	9	11	51	1.68
8190--8524	135	2.5	133	88	4	484	28	12	10	48	1.74
8603--8666	32	2.0	32	96	0	119	25	7	18	48	1.75
10007--10056	20	2.5	20	93	0	82	22	20	10	48	1.79
12707--13042	121	2.8	121	92	0	528	22	15	26	35	1.94
13223--13301	34	2.3	34	100	0	158	21	15	27	35	1.93
16925--16959	18	1.9	18	88	0	52	28	17	11	42	1.83
18385--18435	16	3.2	16	75	2	50	58	9	7	23	1.56
24445--24481	2	18.5	2	100	0	74	48	0	0	51	1.00
26166--26238	31	2.4	29	82	11	83	32	12	26	28	1.92
26200--26243	19	2.4	19	92	3	72	36	18	22	22	1.95
30579--30628	19	2.7	18	78	9	55	40	20	20	20	1.92
32853--32891	19	2.1	19	90	0	60	30	2	7	58	1.39
34515--34602	10	9.1	10	74	12	85	20	22	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34515--34604	19	4.7	19	88	1	117	20	24	27	27	1.99
34599--34655	17	3.4	17	92	0	78	19	42	21	17	1.90
34645--34681	7	5.4	7	93	6	67	16	29	29	24	1.96
34645--34681	13	2.7	14	95	4	67	16	29	29	24	1.96
34623--34677	17	3.0	18	89	7	76	16	36	27	20	1.93
41856--41924	10	7.1	10	69	12	54	20	21	28	28	1.98
41856--41926	19	3.7	19	81	5	72	19	23	28	28	1.99
41920--41977	17	3.4	17	92	0	98	18	43	22	15	1.88
41967--42003	7	5.4	7	87	6	58	16	27	29	27	1.97
46143--46247	21	5.1	21	74	11	92	20	20	22	36	1.95
46168--46237	19	3.5	19	74	12	68	20	20	21	38	1.94
46149--46247	42	2.4	42	93	3	166	21	19	23	36	1.95
47097--47322	21	10.8	21	75	14	216	34	25	19	20	1.97
47097--47338	82	2.9	83	88	3	353	35	24	19	21	1.96
47100--47324	42	5.4	42	91	3	355	35	25	19	20	1.96
47272--47338	21	3.3	18	73	19	53	38	20	17	22	1.93
47334--47386	21	2.5	21	87	0	88	20	18	30	30	1.97
48118--48171	24	2.2	24	86	0	81	27	33	11	27	1.91
49219--49248	15	1.9	16	93	6	53	26	3	0	70	1.03
50381--50415	17	2.1	17	100	0	70	28	25	34	11	1.91
51852--51897	14	3.8	13	78	21	55	56	19	0	23	1.42
51866--51894	14	2.1	14	100	0	58	48	24	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52881--52950	24	2.9	24	93	2	113	27	21	14	37	1.92
53200--53233	18	1.9	18	88	5	52	14	26	32	26	1.95
54092--54238	45	3.3	45	80	11	167	36	7	14	42	1.74
54093--54256	45	3.7	43	79	8	157	36	7	15	40	1.76
54410--54532	56	2.2	56	85	7	167	38	5	13	43	1.67
54687--54807	64	1.9	64	87	3	181	28	10	13	47	1.76
54750--54839	39	2.3	38	79	9	101	30	8	15	45	1.77
54772--55036	97	2.7	95	81	4	280	37	7	13	41	1.72
54962--55075	39	2.9	39	88	0	156	39	7	11	42	1.68
54867--55168	136	2.2	136	89	1	453	38	6	12	41	1.71
54750--55227	233	2.1	233	80	2	530	35	7	14	43	1.72
55003--55259	97	2.6	96	83	6	302	37	7	14	40	1.73
59270--59312	22	1.9	22	85	4	59	30	2	2	65	1.18
61180--61236	12	4.8	12	80	6	62	35	0	12	52	1.39
64406--64566	64	2.5	64	83	2	162	32	20	21	25	1.98
67334--67494	64	2.5	64	85	2	198	32	19	21	26	1.97

Tables:   1

The End!