genome.fa.s5827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005827.1 Hibiscus syriacus cultivar Beakdansim tig00013655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80989

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4640--4687	21	2.3	20	86	13	62	79	4	10	6	1.05
11797--11839	22	2.0	22	90	0	68	65	4	18	11	1.42
12900--12932	11	3.1	11	95	4	59	0	15	0	84	0.61
17786--18594	403	2.0	403	94	0	1429	20	19	24	35	1.95
20408--20451	23	2.0	23	86	4	63	63	4	20	11	1.44
24071--24141	29	2.4	29	100	0	142	36	15	18	29	1.92
27257--27309	21	2.5	21	96	0	97	20	16	28	33	1.95
30739--30831	21	4.5	21	78	4	100	39	18	24	17	1.91
30739--30831	41	2.3	41	100	0	186	39	18	24	17	1.91
30758--30892	41	3.3	41	84	4	148	37	21	20	20	1.94
30820--30913	20	4.7	20	80	7	91	32	25	17	24	1.96
31100--31143	22	2.0	22	90	0	70	22	43	15	18	1.88
31387--31430	20	2.2	20	87	0	61	11	18	20	50	1.77
32739--32783	18	2.5	18	85	0	63	26	46	15	11	1.79
33310--33367	14	3.9	14	81	16	71	51	24	15	8	1.71
33294--33381	32	2.7	33	89	3	142	48	21	18	11	1.79
33256--33381	19	7.2	19	73	20	85	44	23	19	12	1.85
33396--33501	19	5.9	18	74	14	94	14	20	22	42	1.88
33445--33499	20	2.8	19	83	5	65	20	23	21	34	1.97
35490--35610	19	6.6	19	88	9	189	45	18	22	14	1.84
35490--35610	52	2.2	55	89	7	185	45	18	22	14	1.84
36721--36774	24	2.2	24	90	0	81	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36944--36968	12	2.1	12	100	0	50	72	0	28	0	0.86
39235--39398	19	9.7	19	63	24	89	42	20	21	15	1.88
39234--39399	33	5.0	33	87	5	219	42	19	21	16	1.89
39544--39580	14	2.6	14	91	0	65	45	24	0	29	1.53
40936--41002	21	3.2	21	68	4	55	19	20	35	23	1.95
40936--41058	42	2.9	41	80	7	113	22	17	36	22	1.95
43058--43237	19	9.8	19	72	14	128	45	21	21	12	1.84
43083--43182	33	3.0	33	86	1	137	40	25	23	12	1.88
43153--43242	19	4.7	19	90	2	144	47	22	18	11	1.80
43153--43242	39	2.3	38	92	1	144	47	22	18	11	1.80
43238--43304	19	3.5	19	85	2	89	10	16	25	47	1.78
43821--43914	20	4.7	20	80	2	89	24	17	24	34	1.96
43903--43995	20	4.5	21	78	4	100	17	24	18	39	1.91
43842--43976	41	3.3	41	84	4	148	20	20	20	38	1.94
43903--43995	41	2.3	41	100	0	186	17	24	18	39	1.91
45499--45541	20	2.3	19	80	8	52	30	23	16	30	1.96
48887--48926	19	2.1	19	100	0	80	47	10	27	15	1.77
51937--51982	23	2.0	23	82	0	56	19	28	30	21	1.98
65173--65215	22	2.0	22	86	9	61	62	4	18	13	1.48
72980--73035	19	2.9	19	94	0	94	30	19	8	41	1.82
74490--74525	14	2.6	14	100	0	72	19	13	22	44	1.86

Tables:   1

The End!