Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005828.1 Hibiscus syriacus cultivar Beakdansim tig00013665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86090

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2210--2337
48
2.8
47
83
5
154
29
21
7
41
1.80
6258--6318
17
3.6
17
79
20
74
11
16
0
72
1.13
6260--6307
16
3.3
15
75
24
57
10
16
0
72
1.10
6259--6361
33
3.1
32
82
12
102
6
17
3
71
1.23
9204--9324
48
2.6
45
79
8
134
30
19
7
42
1.79
9196--9324
46
2.8
48
81
6
140
29
20
6
42
1.78
13645--13679
14
2.5
14
95
0
61
68
14
5
11
1.37
17992--18017
13
2.0
13
100
0
52
69
0
23
7
1.14
18015--18082
26
2.5
28
81
16
97
66
1
23
8
1.28
18324--18368
23
2.0
23
86
8
65
64
13
0
22
1.28
18351--18387
6
6.3
6
85
14
51
81
0
0
18
0.70
18351--18387
11
3.2
11
85
14
56
81
0
0
18
0.70
26158--26183
2
13.0
2
100
0
52
50
0
0
50
1.00
26232--26285
17
2.8
19
78
21
60
70
0
27
1
0.98
26584--26664
37
2.2
37
90
0
126
37
1
11
50
1.46
26968--27019
20
2.5
21
84
3
61
46
1
0
51
1.12
28011--28038
14
2.0
14
100
0
56
50
0
0
50
1.00
28852--28893
21
2.0
21
85
0
57
30
4
47
16
1.67
29575--29667
30
3.1
28
79
10
96
47
1
8
43
1.41
29586--29660
30
2.5
30
82
6
98
50
1
4
44
1.29
29748--29818
34
2.1
34
86
0
97
47
5
5
40
1.50
33834--33903
27
2.8
25
83
12
99
25
22
25
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35260--35306
18
2.6
18
89
0
76
21
10
36
31
1.88
36004--36078
23
3.4
22
81
3
80
24
16
25
34
1.95
40393--40436
9
4.8
9
88
11
63
75
0
0
25
0.81
40571--40604
16
2.1
16
88
0
50
73
0
5
20
1.04
49789--49828
20
2.0
20
85
9
55
20
32
25
22
1.98
49791--49850
23
2.7
23
80
7
72
20
35
25
20
1.96
49832--49871
21
1.9
21
89
0
62
25
40
25
10
1.86
58340--58588
123
2.0
122
90
2
392
27
12
20
40
1.87
58590--58636
21
2.2
22
88
11
71
29
19
27
23
1.98
58820--58970
36
4.2
36
89
0
194
33
11
23
30
1.91
58827--58961
72
1.9
72
90
0
216
30
12
23
33
1.92
60763--60822
25
2.4
25
97
0
111
56
3
6
33
1.42
60826--60931
38
2.8
38
90
5
169
26
12
24
36
1.91
61086--61134
25
2.0
25
95
0
89
57
0
6
36
1.24
61143--61230
45
2.0
45
93
0
149
23
10
27
38
1.87
60884--61637
299
2.6
294
85
8
1000
41
6
15
36
1.73
61387--61441
25
2.2
25
93
0
92
52
3
7
36
1.47
61646--61698
27
1.9
28
85
11
74
39
1
1
56
1.21
64532--64817
27
9.9
27
73
14
187
38
4
13
43
1.64
64499--64700
90
2.2
90
88
0
287
36
4
14
44
1.67
64539--64817
117
2.4
117
92
0
459
38
4
14
42
1.65
64656--64835
90
2.0
90
87
2
263
39
4
12
43
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67927--67978
25
2.1
25
92
0
86
32
17
17
32
1.93
68726--68833
25
4.2
24
71
21
60
39
2
2
54
1.29
68752--68814
26
2.4
25
82
12
74
39
3
3
53
1.33
68752--68814
24
2.5
26
85
10
78
39
3
3
53
1.33
68759--68830
24
2.9
25
80
11
69
38
2
2
55
1.29
73281--73343
9
7.1
8
75
18
54
77
4
0
17
0.93
73252--73328
21
3.5
22
77
20
81
72
7
0
19
1.08
75000--75180
59
3.1
58
77
5
168
26
18
27
27
1.98
75208--75614
39
10.6
39
86
4
533
35
16
15
32
1.91
75208--75614
77
5.3
77
86
3
543
35
16
15
32
1.91
77696--77769
29
2.6
29
97
2
141
43
16
21
18
1.88
77854--77886
15
2.2
15
94
0
57
15
21
33
30
1.94
84688--84830
60
2.4
60
75
1
151
35
16
13
34
1.88

Tables:   1

The End!