genome.fa.s583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000583.1 Hibiscus syriacus cultivar Beakdansim tig00001138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110917

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569--688	62	2.0	56	87	9	168	39	15	5	40	1.70
20240--20273	2	16.5	2	93	6	59	50	2	0	47	1.16
24190--24223	16	2.1	16	88	0	50	50	0	2	47	1.16
24265--24298	16	2.0	18	88	11	54	26	2	5	64	1.30
24766--25013	130	1.9	130	92	0	415	35	12	15	35	1.86
25414--25489	35	2.2	35	88	4	109	36	1	21	40	1.61
27209--27244	18	2.1	18	89	5	56	55	2	8	33	1.44
28114--28294	90	2.0	90	96	0	335	27	19	11	41	1.86
40016--40133	55	2.1	55	96	1	218	33	22	13	30	1.93
45137--45194	31	1.9	30	83	13	75	44	1	5	48	1.35
55772--55804	16	2.0	17	88	5	50	18	6	9	66	1.40
57549--57594	24	1.9	24	86	0	65	17	23	32	26	1.97
71870--71909	20	2.0	21	85	5	55	45	0	0	55	0.99
71881--71945	22	3.0	22	75	18	64	50	0	1	47	1.10
71881--71938	23	2.5	22	78	13	64	48	0	1	50	1.11
84976--85183	103	2.0	103	90	4	330	39	12	21	26	1.88
98311--98449	63	2.2	62	83	6	163	37	18	17	25	1.93
98356--98481	63	2.0	66	90	4	204	34	19	19	26	1.96
98929--99133	101	2.1	96	92	4	338	24	14	24	37	1.92
99148--99201	23	2.3	23	80	0	63	24	27	22	25	2.00
99148--99212	23	2.8	23	69	4	60	24	24	23	27	2.00
105258--105380	64	2.0	62	84	12	162	34	20	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105820--106000	96	1.9	97	93	3	312	24	12	25	37	1.90
106042--106126	23	3.8	23	81	6	102	21	24	25	28	1.99

Tables:   1

The End!