genome.fa.s5831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005831.1 Hibiscus syriacus cultivar Beakdansim tig00013670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104488

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949--1985	2	18.5	2	100	0	74	48	0	0	51	1.00
16523--16558	19	1.9	19	88	5	56	41	0	8	50	1.33
29671--29730	13	4.8	13	76	15	72	26	0	1	71	0.95
29671--29725	20	2.9	20	71	23	64	27	0	1	70	0.97
29675--29717	16	2.7	16	88	0	59	25	0	2	72	0.97
31218--31253	18	2.0	18	88	0	54	13	2	55	27	1.52
31085--31265	75	2.5	75	88	2	260	22	4	49	23	1.69
31322--31374	27	2.0	27	88	0	79	28	3	45	22	1.70
31486--31520	15	2.3	15	90	0	52	5	2	65	25	1.28
37673--37757	29	2.9	28	84	6	107	17	41	25	15	1.89
37956--38036	29	2.8	29	84	0	117	11	23	33	32	1.90
39000--39041	21	2.0	20	86	4	57	28	4	0	66	1.12
42582--42654	30	2.5	31	84	13	100	38	8	20	32	1.82
44587--44917	46	7.2	46	91	2	490	41	6	19	32	1.78
44742--44814	22	3.2	22	63	32	55	36	2	23	36	1.69
45034--45091	29	2.0	29	86	0	80	12	36	27	24	1.91
45169--45251	23	3.6	23	90	3	114	26	26	36	10	1.89
45269--45353	29	2.9	29	98	0	161	20	30	37	11	1.88
45427--45500	29	2.6	29	91	0	112	25	29	28	16	1.97
51066--51259	101	1.9	102	80	3	230	24	13	14	47	1.80
51066--51259	51	3.8	51	81	1	219	24	13	14	47	1.80
57310--57359	20	2.5	20	93	0	82	12	18	18	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57346--57396	19	2.6	20	90	3	77	15	17	23	43	1.88
59172--59215	3	14.7	3	100	0	88	68	0	0	31	0.90
60146--60184	5	7.6	5	97	2	69	58	0	0	41	0.98
62052--62128	31	2.5	31	82	2	100	28	31	25	14	1.95
62005--62128	63	2.0	63	80	6	144	26	29	26	17	1.98
63032--63101	5	12.8	5	74	16	59	8	22	50	18	1.74
63025--63102	17	4.3	17	84	15	111	11	23	47	17	1.80
62998--63035	7	5.4	7	100	0	76	26	28	28	15	1.96
63018--63101	22	4.0	22	82	17	106	11	23	46	17	1.82
69345--69421	31	2.5	31	80	2	91	28	29	25	15	1.96
70311--70397	5	15.8	5	73	17	66	9	22	49	18	1.76
70316--70398	17	4.9	17	100	0	166	10	22	48	18	1.79
70304--70346	22	2.0	22	100	0	86	9	23	48	18	1.76
78790--78853	5	12.8	5	94	0	83	4	40	35	18	1.72
78851--78941	6	15.2	6	100	0	182	0	16	49	34	1.46
79018--79093	40	1.9	40	100	0	152	42	13	19	25	1.87
84290--84333	5	8.8	5	92	0	52	6	40	36	15	1.74
84331--84403	6	12.2	6	97	0	128	2	16	49	31	1.60
84677--84731	22	2.5	22	75	0	56	29	9	23	38	1.85
86983--87030	15	3.2	15	84	0	69	8	12	66	12	1.44

Tables:   1

The End!