Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005832.1 Hibiscus syriacus cultivar Beakdansim tig00013673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84898

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2458--2570
24
4.8
24
72
23
105
29
0
12
58
1.34
2488--2591
19
4.3
24
64
27
67
29
0
11
58
1.33
2446--2661
74
3.0
73
89
7
332
28
1
11
59
1.40
10746--10800
10
5.4
10
81
18
69
9
12
0
78
0.97
10739--10800
11
6.0
11
78
16
62
9
11
0
79
0.95
10739--10800
19
3.1
19
84
9
79
9
11
0
79
0.95
12642--12675
16
2.1
16
100
0
68
38
26
11
23
1.89
13126--13167
18
2.3
19
91
4
68
47
9
2
40
1.49
15223--15256
14
2.5
14
95
4
61
55
0
0
44
0.99
15895--16266
96
3.9
96
87
3
506
29
17
24
29
1.97
16272--16709
91
4.9
91
89
3
642
25
22
15
36
1.93
17226--17455
36
6.4
36
73
6
182
39
13
17
30
1.88
17309--17465
72
2.2
73
88
1
226
40
15
17
26
1.89
17372--17659
101
2.8
102
74
12
236
40
12
18
28
1.87
17584--17680
37
2.7
36
85
4
126
45
10
17
26
1.80
19829--19908
41
1.9
43
82
10
103
7
17
0
75
1.03
19870--19908
18
2.2
18
85
0
51
7
17
0
74
1.05
28296--28399
3
34.7
3
98
0
199
33
0
0
65
0.99
28925--28966
15
2.8
15
89
7
59
76
2
21
0
0.90
28925--28966
20
2.1
20
86
8
59
76
2
21
0
0.90
37635--37664
8
3.6
8
95
4
51
23
16
0
60
1.36
41186--41240
18
3.2
17
87
10
76
85
0
14
0
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41186--41232
16
3.0
16
87
9
62
87
0
12
0
0.55
42368--43255
83
10.7
83
95
2
1479
27
13
22
36
1.92
43992--44786
113
7.0
113
98
0
1466
36
12
19
30
1.90
45073--45143
3
23.7
3
97
0
124
33
2
0
63
1.09
45664--45705
15
2.8
15
89
7
59
76
2
21
0
0.90
45664--45705
20
2.1
20
86
8
59
76
2
21
0
0.90
52568--52855
146
2.0
146
93
0
495
28
19
15
36
1.92
53186--53224
18
2.2
18
90
9
62
56
7
10
25
1.59
56904--57154
124
2.0
124
98
0
484
39
19
13
27
1.89
57410--57474
23
2.8
24
86
13
93
50
15
4
29
1.64
62326--62367
22
1.9
22
85
9
59
38
9
16
35
1.81
68330--68354
12
2.1
12
100
0
50
32
24
28
16
1.96
72406--72430
2
12.5
2
100
0
50
52
0
0
48
1.00
78018--78113
23
4.1
24
82
8
110
33
23
19
22
1.97
78468--78498
2
15.5
2
100
0
62
51
0
0
48
1.00
82702--82743
22
1.9
22
85
9
59
45
0
0
54
0.99

Tables:   1

The End!