genome.fa.s5833.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005833.1 Hibiscus syriacus cultivar Beakdansim tig00013674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149665

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008--3052	22	2.1	21	84	12	56	35	26	4	33	1.77
2801--3415	117	5.3	116	76	6	476	29	18	12	39	1.87
3114--3175	19	3.2	20	71	15	58	19	20	8	51	1.72
3161--3378	116	1.9	117	83	6	291	32	20	10	36	1.87
2906--3415	233	2.2	233	79	4	544	30	19	11	37	1.88
10461--10493	15	2.2	15	100	0	66	27	6	30	36	1.81
19752--19788	19	1.9	19	88	0	56	35	18	13	32	1.90
22065--22184	6	18.7	6	78	14	100	0	20	0	78	0.86
22076--22216	16	9.5	14	70	23	85	2	19	0	78	0.88
22066--22216	7	20.4	7	72	17	85	3	17	0	78	0.93
30103--30434	53	6.2	53	88	2	475	28	27	13	29	1.95
30095--30436	108	3.2	108	91	0	526	29	27	13	29	1.94
30103--30457	161	2.2	161	87	4	511	28	27	14	30	1.95
30434--30746	53	5.9	53	85	7	379	25	25	18	30	1.98
30434--30746	104	3.0	102	82	7	369	25	25	18	30	1.98
30441--30748	156	2.0	157	86	6	437	25	25	18	30	1.98
31896--32199	124	2.4	125	91	0	475	23	26	17	32	1.96
33457--33486	16	1.9	16	93	6	53	13	20	0	66	1.24
33485--33569	23	3.7	22	72	20	66	5	20	0	74	1.03
33456--33548	6	15.2	6	70	19	59	7	18	0	74	1.05
36132--36289	21	7.6	21	82	7	144	17	21	20	39	1.92
36152--36289	42	3.3	42	85	6	190	17	21	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36131--36286	63	2.5	63	84	7	185	17	21	20	40	1.92
38692--38727	17	2.0	19	89	10	58	16	38	22	22	1.93
41670--41742	3	25.0	3	79	10	80	69	1	0	28	0.96
41671--41745	26	2.7	27	84	10	82	72	1	0	26	0.93
48278--48341	8	8.0	8	100	0	128	25	12	12	50	1.75
50142--50269	60	2.1	60	86	2	177	28	19	15	35	1.93
54181--54401	51	4.2	51	79	7	212	30	5	23	39	1.77
54353--54793	51	8.7	51	82	2	467	33	7	20	38	1.80
54244--54464	109	2.0	109	82	1	264	32	4	23	39	1.76
54544--54620	25	3.0	25	68	17	77	35	9	19	36	1.84
54353--54793	152	2.9	151	84	3	537	33	7	20	38	1.80
54757--54841	38	2.2	38	85	0	125	30	10	21	37	1.87
55631--55780	36	4.2	36	86	0	212	28	13	19	38	1.89
57195--57227	6	5.5	6	92	0	57	30	15	15	39	1.88
57420--57468	2	24.5	2	100	0	98	51	0	0	48	1.00
59150--59303	59	2.6	60	81	9	199	38	5	25	29	1.78
69609--69700	3	30.7	3	93	0	157	64	3	0	32	1.10
84433--84501	31	2.3	31	92	2	113	26	17	17	39	1.91
92465--92522	7	8.1	7	87	9	82	1	15	0	82	0.74
95799--95845	18	2.6	18	96	0	85	31	29	12	25	1.93
96002--96053	21	2.5	21	84	12	79	26	19	26	26	1.99
108511--108584	29	2.5	31	78	14	93	37	6	10	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108523--108595	29	2.6	29	84	6	96	32	9	12	45	1.74
108506--108602	29	3.3	28	75	13	90	35	9	11	44	1.72
108615--108712	29	3.4	29	92	4	155	44	0	8	46	1.33
110840--110880	18	2.3	18	91	0	64	46	7	4	41	1.53
111713--111754	17	2.4	18	80	15	52	38	14	9	38	1.78
112244--112284	22	1.9	22	85	5	57	53	4	12	29	1.58
112247--112326	30	2.7	29	82	7	88	62	3	6	27	1.36
113946--114011	22	3.0	22	84	4	80	60	4	0	34	1.17
113973--114059	14	7.2	12	83	12	65	57	0	1	41	1.06
113982--114066	10	8.2	11	87	7	92	55	0	1	43	1.07
114004--114066	2	32.0	2	90	9	103	50	0	1	47	1.10
114305--114783	136	3.6	136	93	2	765	25	22	17	33	1.96
114703--114877	88	1.9	92	88	4	268	25	21	14	39	1.91
115868--115920	7	6.8	8	82	18	67	7	11	0	81	0.88
115867--115924	16	3.6	16	95	0	107	6	12	0	81	0.88
130539--130912	200	1.9	200	81	3	466	25	18	20	34	1.96
130997--131178	71	2.5	71	78	7	179	25	20	24	29	1.99
134216--134369	53	2.9	53	79	5	157	40	16	20	22	1.91
134216--134368	54	2.8	53	82	2	171	40	16	20	22	1.91
134729--134803	22	3.4	22	90	0	123	34	17	13	34	1.89
135150--135184	17	2.1	17	100	0	70	40	17	17	25	1.90
135466--135815	45	7.8	45	93	0	583	23	23	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135933--136014	3	27.0	3	80	11	96	30	1	2	65	1.13
137488--137532	22	2.1	22	88	12	67	28	0	4	66	1.11
137908--137936	9	3.3	9	95	4	51	62	0	0	37	0.96
143780--143805	3	8.7	3	100	0	52	30	0	0	69	0.89

Tables:   1

The End!