genome.fa.s5834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005834.1 Hibiscus syriacus cultivar Beakdansim tig00013678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71894

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7097--7170	38	2.0	38	94	5	134	41	17	10	29	1.83
15250--15297	23	2.3	20	80	19	62	35	39	0	25	1.56
16011--16096	42	2.1	41	95	4	156	48	4	1	45	1.30
22436--22466	16	1.9	16	93	0	53	12	35	12	38	1.82
24310--24348	2	19.5	2	100	0	78	51	0	0	48	1.00
24348--24383	2	18.0	2	100	0	72	50	0	50	0	1.00
32583--32609	2	13.5	2	100	0	54	48	0	0	51	1.00
38176--38207	2	16.0	2	100	0	64	50	0	0	50	1.00
44302--44340	21	1.9	19	85	10	51	38	2	0	58	1.12
45183--45299	19	5.7	19	76	15	117	21	21	23	33	1.97
45177--45299	21	6.0	21	75	16	114	21	21	23	33	1.97
45192--45299	42	2.6	42	93	0	189	21	22	23	33	1.97
45389--45427	12	3.4	12	86	10	55	20	61	17	0	1.34
46084--46193	21	5.3	21	81	14	138	23	20	24	30	1.98
53675--53843	21	7.6	21	83	11	194	0	20	33	44	1.56
53661--53846	24	7.9	24	87	3	252	0	20	34	44	1.56
53669--53846	3	59.3	3	86	2	151	0	21	34	43	1.57
61078--61135	13	4.3	13	88	4	80	15	43	22	18	1.88
62405--62445	18	2.3	18	82	0	55	51	0	17	31	1.46
63585--63659	24	3.1	23	75	7	60	21	14	17	46	1.83
63622--63691	12	5.8	12	71	6	52	20	11	17	51	1.75
63599--63693	24	4.0	24	76	2	84	22	12	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65732--65756	13	1.9	13	100	0	50	16	56	24	4	1.57
65731--65774	18	2.4	18	92	0	70	15	54	20	9	1.68
65752--65789	13	2.9	13	96	0	67	15	44	15	23	1.85
67083--67123	18	2.3	18	82	0	55	51	0	17	31	1.46
68261--68316	24	2.3	23	73	8	58	21	16	16	46	1.84
68324--68365	12	3.5	12	84	9	50	16	14	14	54	1.71
70452--70476	13	1.9	13	100	0	50	16	48	24	12	1.79
70429--70487	18	3.2	18	95	2	100	18	47	22	11	1.81

Tables:   1

The End!