genome.fa.s5835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005835.1 Hibiscus syriacus cultivar Beakdansim tig00013679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138766

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3517--3572	28	2.0	29	96	3	105	14	35	30	19	1.91
3770--3797	14	2.0	14	100	0	56	7	28	42	21	1.79
3750--3783	10	3.4	10	84	15	52	8	29	38	23	1.85
6250--6315	20	3.3	20	81	12	91	40	27	15	16	1.88
6303--6386	19	4.5	19	93	3	152	36	21	9	32	1.86
6250--6371	39	3.2	39	80	12	128	39	24	12	23	1.89
6303--6386	37	2.2	38	95	2	152	36	21	9	32	1.86
6303--6398	37	2.5	38	91	3	140	37	20	9	32	1.85
7094--7127	12	2.8	12	90	0	50	55	29	0	14	1.40
7253--7306	24	2.2	24	90	0	81	22	18	18	40	1.91
9851--9889	20	2.0	20	94	0	69	41	25	12	20	1.88
9992--10047	25	2.2	25	93	0	94	30	8	17	42	1.80
10007--10057	11	4.5	11	75	15	50	35	9	11	43	1.75
12076--12130	21	2.6	21	83	11	60	21	21	32	23	1.98
12096--12194	21	4.7	21	76	10	96	21	18	35	25	1.95
12097--12194	42	2.3	41	81	14	128	21	17	35	25	1.95
14371--14412	20	2.2	20	91	4	68	11	19	23	45	1.83
14441--14472	13	2.5	13	100	0	64	78	15	6	0	0.95
14445--14478	13	2.8	12	91	8	52	76	14	8	0	1.01
14685--14735	22	2.3	22	96	0	93	21	13	43	21	1.87
14856--14947	20	4.6	20	70	15	82	22	17	22	36	1.94
18240--18267	13	2.2	13	100	0	56	21	14	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19432--19462	2	15.5	2	100	0	62	48	0	0	51	1.00
21410--21497	43	2.0	43	89	4	133	26	18	21	34	1.96
27537--27628	39	2.4	38	87	7	123	44	2	18	34	1.62
27537--27650	39	2.9	38	80	11	108	46	1	17	34	1.59
31015--31059	22	2.0	22	100	0	90	24	31	4	40	1.75
31275--31324	25	2.0	25	88	7	75	40	32	8	20	1.81
34075--34198	3	41.3	3	95	0	221	33	2	0	63	1.07
34772--34811	19	2.2	19	90	4	64	77	2	20	0	0.88
35663--35709	14	3.5	13	80	13	51	40	2	2	55	1.24
44415--44500	37	2.3	38	88	6	131	38	25	15	20	1.92
47808--47874	23	2.9	23	90	0	98	26	25	28	19	1.99
47892--48104	103	2.1	103	94	1	374	36	23	13	26	1.92
53026--53109	23	3.7	23	93	0	132	23	27	30	17	1.97
53125--53337	103	2.1	103	94	0	372	37	23	13	26	1.91
60417--60470	20	2.7	20	94	0	90	11	18	18	51	1.74
60457--60507	19	2.6	20	90	3	77	15	17	23	43	1.88
60609--60790	17	10.2	17	73	17	113	37	0	4	57	1.23
60597--60779	51	3.7	50	74	19	145	38	1	4	56	1.27
60606--60786	12	15.0	12	72	21	123	38	0	4	56	1.23
60648--60787	15	9.3	15	75	15	80	37	0	2	58	1.18
60596--60786	53	3.6	53	77	20	170	37	1	4	57	1.25
60597--60787	44	4.4	43	76	15	173	37	1	4	57	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66768--66797	11	2.7	11	100	0	60	26	0	0	73	0.84
67893--67921	13	2.2	13	100	0	58	55	6	6	31	1.53
68068--68286	115	2.0	107	87	11	311	47	5	6	40	1.52
68516--68564	19	2.5	20	78	18	50	16	0	8	75	1.03
72060--72095	16	2.2	16	95	0	63	27	22	5	44	1.75
75818--76155	158	2.1	158	85	4	450	28	17	5	49	1.69
81264--81315	3	17.3	3	100	0	104	67	0	0	32	0.91
85329--85378	27	2.0	25	81	14	59	36	6	8	50	1.57
86338--86384	18	2.7	18	80	3	51	38	6	25	29	1.81
90468--90511	23	1.9	23	85	0	61	45	22	13	18	1.84
94835--94885	22	2.3	22	80	6	59	31	11	9	47	1.73
95523--95584	2	31.0	2	100	0	124	50	0	0	50	1.00
99495--99526	4	8.0	4	100	0	64	25	0	25	50	1.50
101058--101131	37	2.0	36	89	2	112	50	1	1	47	1.18
101751--101815	29	2.2	29	83	0	76	16	20	12	50	1.77
102412--102471	29	2.1	30	90	6	97	51	18	15	15	1.76
102416--102478	28	2.2	28	86	8	83	55	15	12	15	1.69
102470--102559	46	1.9	47	84	6	121	40	15	11	33	1.83
107026--107062	19	1.9	19	88	0	56	48	8	13	29	1.71
107116--107149	12	2.8	12	81	0	50	52	0	20	26	1.46
135303--135409	56	1.9	56	94	0	187	39	15	19	25	1.91
135930--136018	46	2.0	44	86	4	124	35	15	22	25	1.94

Tables:   1

The End!