Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005836.1 Hibiscus syriacus cultivar Beakdansim tig00013680_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 991970
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 6
Found at i:3793 original size:4 final size:4
Alignment explanation
Indices: 3777--3810 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
3767 ATAAAAGGAA
*
3777 AAAT AAGT AAAT AAAT AAAT AAAT AAAT GAAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT A
3811 TGAATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:4649 original size:37 final size:37
Alignment explanation
Indices: 4608--4712 Score: 183
Period size: 37 Copynumber: 2.8 Consensus size: 37
4598 GTGCTTGTGG
4608 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
4645 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
* * *
4682 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATCTTTAGGAGTTTAAATCATAGTAG
4713 GACGAAAAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (37 bp):
ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
Found at i:9657 original size:23 final size:22
Alignment explanation
Indices: 9601--9665 Score: 94
Period size: 22 Copynumber: 2.9 Consensus size: 22
9591 GAGTCGTGGG
9601 TTCTACGCGGTCCTTCGGGACA
1 TTCTACGCGGTCCTTCGGGACA
* *
9623 ATCTACGTGGTCCTTCGGGACA
1 TTCTACGCGGTCCTTCGGGACA
*
9645 TTTCTACGCGGTCCTACGGGA
1 -TTCTACGCGGTCCTTCGGGA
9666 TAATACTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 20 0.54
23 17 0.46
ACGTcount: A:0.15, C:0.29, G:0.28, T:0.28
Consensus pattern (22 bp):
TTCTACGCGGTCCTTCGGGACA
Found at i:9680 original size:23 final size:22
Alignment explanation
Indices: 9602--9680 Score: 86
Period size: 23 Copynumber: 3.5 Consensus size: 22
9592 AGTCGTGGGT
*
9602 TCTACGCGGTCCTTCGGGACAA
1 TCTACGTGGTCCTTCGGGACAA
*
9624 TCTACGTGGTCCTTCGGGACATT
1 TCTACGTGGTCCTTCGGGACA-A
* * *
9647 TCTACGCGGTCCTACGGGATAA
1 TCTACGTGGTCCTTCGGGACAA
*
9669 TACTATGTGGTC
1 T-CTACGTGGTC
9681 TTTCAAGATA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 21 0.45
23 26 0.55
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.29
Consensus pattern (22 bp):
TCTACGTGGTCCTTCGGGACAA
Found at i:9721 original size:24 final size:24
Alignment explanation
Indices: 9690--9741 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9680 CTTTCAAGAT
** *
9690 ATTTCTATGTGGCACTTCGGTGTA
1 ATTTCTATGTAACACTTCGGTGCA
9714 ATTTCTATGTAACACTTCGGTGCA
1 ATTTCTATGTAACACTTCGGTGCA
9738 ATTT
1 ATTT
9742 ATACGAGCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (24 bp):
ATTTCTATGTAACACTTCGGTGCA
Found at i:9859 original size:6 final size:6
Alignment explanation
Indices: 9848--9917 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
9838 TAATGAACTG
* * * **
9848 TGATAA TGATAA TTATAG TGACAA TGATAA TGATAA TGATGT TGATAA
1 TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA
* * *
9896 TGATAT TGATGA TGATGA TGAT
1 TGATAA TGATAA TGATAA TGAT
9918 CATAATGATG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.40, C:0.01, G:0.21, T:0.37
Consensus pattern (6 bp):
TGATAA
Found at i:9893 original size:18 final size:18
Alignment explanation
Indices: 9848--9929 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 18
9838 TAATGAACTG
* * *
9848 TGATAATGATAATTATAG
1 TGATGATGATAATGATAA
**
9866 TGACAATGATAATGATAA
1 TGATGATGATAATGATAA
* *
9884 TGATGTTGATAATGATAT
1 TGATGATGATAATGATAA
* *
9902 TGATGATGATGATGATCA
1 TGATGATGATAATGATAA
*
9920 TAATGATGAT
1 TGATGATGAT
9930 GATGTTGATG
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (18 bp):
TGATGATGATAATGATAA
Found at i:9931 original size:6 final size:6
Alignment explanation
Indices: 9871--9950 Score: 63
Period size: 6 Copynumber: 13.3 Consensus size: 6
9861 TATAGTGACA
* * * * *
9871 ATGATA ATGATA ATGATG TTGATA ATGAT- ATTGATG ATGATG ATGATC
1 ATGATG ATGATG ATGATG ATGATG ATGATG A-TGATG ATGATG ATGATG
* * * *
9919 ATAATG ATGATG ATGTTG ATGTTG GTGATG AT
1 ATGATG ATGATG ATGATG ATGATG ATGATG AT
9951 ATATATATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
5 1 0.02
6 58 0.97
7 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.39
Consensus pattern (6 bp):
ATGATG
Found at i:9939 original size:12 final size:12
Alignment explanation
Indices: 9848--9932 Score: 64
Period size: 12 Copynumber: 6.8 Consensus size: 12
9838 TAATGAACTG
*
9848 TGATAATGATAA
1 TGATGATGATAA
* *
9860 TTAT-AGTGACAA
1 TGATGA-TGATAA
*
9872 TGATAATGATAA
1 TGATGATGATAA
*
9884 TGATGTTGATAA
1 TGATGATGATAA
*
9896 TGATATTGATGATGA
1 TG--A-TGATGATAA
*
9911 TGATGATCATAA
1 TGATGATGATAA
9923 TGATGATGAT
1 TGATGATGAT
9933 GTTGATGTTG
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
11 1 0.02
12 44 0.77
13 2 0.04
14 1 0.02
15 9 0.16
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.36
Consensus pattern (12 bp):
TGATGATGATAA
Found at i:10331 original size:24 final size:23
Alignment explanation
Indices: 10295--10339 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
10285 TGTGATTGTA
*
10295 TTTAATGTAAATTATTCAATTTAT
1 TTTAATGTAAATT-TTAAATTTAT
* *
10319 TTTAATTTTAATTTTAAATTT
1 TTTAATGTAAATTTTAAATTT
10340 TCAACCATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 7 0.39
24 11 0.61
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTAATGTAAATTTTAAATTTAT
Found at i:11987 original size:2 final size:2
Alignment explanation
Indices: 11975--12018 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
11965 AATCTATGAG
11975 AT AT GAT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12017 AT
1 AT
12019 GACAATAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 37 0.93
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11999 original size:21 final size:21
Alignment explanation
Indices: 11975--12018 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
11965 AATCTATGAG
*
11975 ATATGATATATATATATATAT
1 ATATAATATATATATATATAT
11996 ATATAATATATATATATATAT
1 ATATAATATATATATATATAT
12017 AT
1 AT
12019 GACAATAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATAATATATATATATATAT
Found at i:12215 original size:30 final size:30
Alignment explanation
Indices: 12179--12238 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
12169 GTTATAAGAT
*
12179 CTATGTGACCATATGAGAATATGACATGAG
1 CTATGTGACCATATGAGAATATGAAATGAG
*
12209 CTATGTGACCATATGAGAATGTGAAATGAG
1 CTATGTGACCATATGAGAATATGAAATGAG
12239 ATTATATGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.27
Consensus pattern (30 bp):
CTATGTGACCATATGAGAATATGAAATGAG
Found at i:12232 original size:16 final size:16
Alignment explanation
Indices: 12181--12232 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
12171 TATAAGATCT
12181 ATGTGACCATATGAGA
1 ATGTGACCATATGAGA
* *
12197 ATATGA-C--ATGAGCT
1 ATGTGACCATATGAG-A
12211 ATGTGACCATATGAGA
1 ATGTGACCATATGAGA
12227 ATGTGA
1 ATGTGA
12233 AATGAGATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 5 0.18
14 5 0.18
15 2 0.07
16 11 0.39
17 5 0.18
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.27
Consensus pattern (16 bp):
ATGTGACCATATGAGA
Found at i:12503 original size:21 final size:22
Alignment explanation
Indices: 12464--12512 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
12454 GTTGTCATTT
12464 GGGACATATGTATAGGTCCTTC
1 GGGACATATGTATAGGTCCTTC
12486 GGGACATA-G-ATAAGGTCCTTC
1 GGGACATATGTAT-AGGTCCTTC
12507 GGGACA
1 GGGACA
12513 AATTTCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.08
21 16 0.62
22 8 0.31
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (22 bp):
GGGACATATGTATAGGTCCTTC
Found at i:14409 original size:16 final size:16
Alignment explanation
Indices: 14385--14417 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14375 AATATGTATG
*
14385 TTGAGTGTTGGTGCTA
1 TTGAATGTTGGTGCTA
14401 TTGAATGTTGGTGCTA
1 TTGAATGTTGGTGCTA
14417 T
1 T
14418 AAAGTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.33, T:0.45
Consensus pattern (16 bp):
TTGAATGTTGGTGCTA
Found at i:16204 original size:43 final size:42
Alignment explanation
Indices: 16141--16400 Score: 319
Period size: 43 Copynumber: 6.1 Consensus size: 42
16131 AACAAAAAAT
* *
16141 GCCGCAATAGGTCAAGATCTATCA-CGGCGTTTTTAGAACAAAC
1 GCCGCAAAAGGTC-AGATCTAT-AGCGGCGTTTTTGGAACAAAC
* * *
16184 GCCGCAAAGGGTCGATATCTATAGCGGCGTTTTTGAAACAAAC
1 GCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTGGAACAAAC
16227 GCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAGACAAAC
1 GCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTGGA-ACAAAC
* * * *
16271 GCCACAATAGGTCAGATCTATAGCGGCTTTTTTGGAACAAAT
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
* *
16313 GCCGCAAAAGGTCAGATCTATAACGGCGTTTCTGGAACAAAC
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
* **
16355 GCCGCAAAAAGTCAGATCTATAGATGCGTTTTT--ATACAAAC
1 GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGA-ACAAAC
16396 GCCGC
1 GCCGC
16401 GAACTAAAAC
Statistics
Matches: 190, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
40 1 0.01
41 11 0.06
42 70 0.37
43 91 0.48
44 17 0.09
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (42 bp):
GCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGAACAAAC
Found at i:16535 original size:27 final size:27
Alignment explanation
Indices: 16483--16537 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
16473 CATTATCAAA
* **
16483 TAAACTTGACATCCATAACATCAAACT
1 TAAACTTGAAATCCATAACAAAAAACT
*
16510 TAAACTTGAAATTCATAACAAAAAACT
1 TAAACTTGAAATCCATAACAAAAAACT
16537 T
1 T
16538 GAAATTCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (27 bp):
TAAACTTGAAATCCATAACAAAAAACT
Found at i:20307 original size:42 final size:42
Alignment explanation
Indices: 20260--20357 Score: 160
Period size: 42 Copynumber: 2.3 Consensus size: 42
20250 ATCACGCTAA
* *
20260 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCGTGC
1 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCATAC
*
20302 TTTAGTGGCGTTTTAAGCACAAACGTCGCTAAATACTCATAC
1 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCATAC
*
20344 TTTCGTGGCGTTTT
1 TTTAGTGGCGTTTT
20358 TTATATAAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (42 bp):
TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATACTCATAC
Found at i:24878 original size:37 final size:39
Alignment explanation
Indices: 24803--24879 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
24793 GTTGGAAAAT
* * *
24803 ATTTATATATATTTTCTTTATAAAATTTAAATTCATAAA
1 ATTTATATATATTTTCTTTACAAAATTGAAAATCATAAA
*
24842 ATTTATATA-ATTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATATATATTTTCTTTACAAAATTGAAAATCATAAA
24879 A
1 A
24880 AAGTTTAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 6 0.18
38 19 0.56
39 9 0.26
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (39 bp):
ATTTATATATATTTTCTTTACAAAATTGAAAATCATAAA
Found at i:25376 original size:15 final size:16
Alignment explanation
Indices: 25356--25395 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
25346 TTTACTTCAA
*
25356 AATGATT-AAGCGTTG
1 AATGATTCAAACGTTG
*
25371 AATGATTCAAATGTTG
1 AATGATTCAAACGTTG
25387 AATGATTCA
1 AATGATTCA
25396 GAAGTTCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (16 bp):
AATGATTCAAACGTTG
Found at i:30332 original size:24 final size:24
Alignment explanation
Indices: 30287--30330 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
30277 AAAAAAAAAT
30287 AAATATTAAAATAATTTATATAAA
1 AAATATTAAAATAATTTATATAAA
30311 AAATA-TAAAAT-ATTTATATA
1 AAATATTAAAATAATTTATATA
30331 TATATATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 6 0.30
24 5 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
AAATATTAAAATAATTTATATAAA
Found at i:31774 original size:3 final size:3
Alignment explanation
Indices: 31768--31825 Score: 82
Period size: 3 Copynumber: 19.7 Consensus size: 3
31758 TAATATTTAT
* *
31768 TAA TAA TAA -AA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
31815 TAT TAA TAA TA
1 TAA TAA TAA TA
31826 TTAAAATGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:31782 original size:21 final size:21
Alignment explanation
Indices: 31755--31827 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
31745 TTTGGGCCTG
31755 TAATAATATTTATTAATAATA
1 TAATAATATTTATTAATAATA
* * *
31776 AAATAATAATAATT-ATAATTA
1 TAATAATATTTATTAATAA-TA
* *
31797 TAATAATA-ATAATAATAATA
1 TAATAATATTTATTAATAATA
31817 TTAATAATATT
1 -TAATAATATT
31828 AAAATGAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
20 8 0.20
21 32 0.80
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAATAATATTTATTAATAATA
Found at i:32379 original size:116 final size:113
Alignment explanation
Indices: 32065--32837 Score: 1040
Period size: 113 Copynumber: 6.8 Consensus size: 113
32055 TTGAATAAGC
* * *
32065 TCTTCTCATTATGAACTTCTTC-TCC-TCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTAG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCT-G
* * * * * *
32128 CAATA-CTGATCCATCGAATGATGAAATCGAGCAAAAATTTGAACAAAT
65 GAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
*
32176 TCTTCTCATTATGAA-TTCATTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCT
1 TCTTCTCATTATGAACTTC-TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTC-CT
* * ** * *
32239 GGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGACCAAAT
64 GGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
* *
32289 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACTCTACC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACTCTTCC
*** * * * *
32354 TGGAAATTTTAATCCATCAAATGATGAATTCAAACAAAAGGTTAAACAAAT
63 TGGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
* *
32405 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGG
*
32470 AAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
66 AAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
* * *
32518 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGTGTTCTTCTCATTATGAACTCTACA
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGA---GTTCTTCTCATTATGAACTCTTCC
*** * * * *
32583 TGGAAATTTTAATCCATCAAATGGTGAATTCAAACAAAAGGTTGAACAAAT
63 TGGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
32634 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA--CTTCTCTG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTC-CTG
32697 GAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
65 GAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
*
32746 TCTTCTCATTATGAATTTCTTCTTCTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTT-CTG
1 TCTTCTCATTATGAACTTCTTCTTC-CTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTG
32810 GAAAAGCTGATCCATCAAATGATGAATT
65 GAAAAGCTGATCCATCAAATGATGAATT
32838 TGAATCTTTG
Statistics
Matches: 586, Mismatches: 59, Indels: 32
0.87 0.09 0.05
Matches are distributed among these distances:
110 3 0.01
111 21 0.04
112 76 0.13
113 278 0.47
114 4 0.01
115 4 0.01
116 198 0.34
117 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.38
Consensus pattern (113 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGG
AAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
Found at i:32379 original size:229 final size:227
Alignment explanation
Indices: 32065--32837 Score: 1137
Period size: 229 Copynumber: 3.4 Consensus size: 227
32055 TTGAATAAGC
* * * ** *
32065 TCTTCTCATTATGAACTTCTTC-TCC-TCTT-TAGATGAGTTCTTCTTATTATGAACTCTTTCTA
1 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCGAGATGAGTTCTTCTCATTATGAACTCTACCTG
* * * * * * * **
32127 GCAATACTGATCCATCGAATGATGAAATCGAGCAAAAATTTGAACAAATTCTTCTCATTATGAA-
66 GAAATTCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
*
32191 TTCATTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATC
131 TTC-TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATC
* * ** * *
32256 AAGTGATGGATTTGAGCAAAAGGTTGACCAAAT
195 AAATGATGAATTCAAGCAAAAAGTTGAACAAAT
32289 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACTCTACC
1 TCTTCTCATTATGAATTTCTTCTTCCTTCTTC-GA-GATGAGTTCTTCTCATTATGAACTCTACC
* *
32354 TGGAAATTTTAATCCATCAAATGATGAATTCAAACAAAAGGTTAAACAAATTCTTCTCATTATGA
64 TGGAAATTCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
* *
32419 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGTTGATCCAT
129 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCAT
32484 CAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
194 CAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
* *
32518 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGTGTTCTTCTCATTATGAACTCTACA
1 TCTTCTCATTATGAATTTCTTCTTCCTTCTTC-GA-GATGAGTTCTTCTCATTATGAACTCTACC
* *
32583 TGGAAATTTTAATCCATCAAATGGTGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
64 TGGAAATTCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
32648 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAAAGCTGATCCAT
129 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCAT
32712 CAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
194 CAAATGATGAATTCAAGCAAAAAGTTGAACAAAT
*
32746 TCTTCTCATTATGAATTTCTTCTTCTCTTCTTC-AGATGAGTTCTTCTCATTATGAACTCT-TCT
1 TCTTCTCATTATGAATTTCTTCTTC-CTTCTTCGAGATGAGTTCTTCTCATTATGAACTCTACCT
** *
32809 GGAAAAGCTGATCCATCAAATGATGAATT
65 GGAAATTCTAATCCATCAAATGATGAATT
32838 TGAATCTTTG
Statistics
Matches: 502, Mismatches: 40, Indels: 13
0.90 0.07 0.02
Matches are distributed among these distances:
224 21 0.04
225 28 0.06
226 29 0.06
227 1 0.00
228 80 0.16
229 340 0.68
230 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.38
Consensus pattern (227 bp):
TCTTCTCATTATGAATTTCTTCTTCCTTCTTCGAGATGAGTTCTTCTCATTATGAACTCTACCTG
GAAATTCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCA
AATGATGAATTCAAGCAAAAAGTTGAACAAAT
Found at i:33683 original size:93 final size:93
Alignment explanation
Indices: 33556--34083 Score: 851
Period size: 93 Copynumber: 5.7 Consensus size: 93
33546 TTGGTTCTAT
* * *
33556 GGTTCCTACCGAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
* *
33621 TCTTCTAAATTTAATGATTGG-TTCTGTG
66 TCTTCCAAATTTAATGATTGGTTTTTG-G
* *
33649 GTTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGATATGAGCACATTCA
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
*
33714 TCTTCTAAATTTAATGATTGGTTTTTGG
66 TCTTCCAAATTTAATGATTGGTTTTTGG
*
33742 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATACTATGAGCACATTCA
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
* *
33807 TCTTCCAAATTCAATGATTAGTTTTTGG
66 TCTTCCAAATTTAATGATTGGTTTTTGG
* *
33835 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGTTATGAGCACATTCA
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
*
33900 TCTTCCAAATTCAATGATTGGTTTTTGG
66 TCTTCCAAATTTAATGATTGGTTTTTGG
*
33928 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGAGCACATTCA
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
* ** *
33993 TCTTCCAAATCTAATGATTATTTTTTTGT
66 TCTTCCAAATTTAATGATT-GGTTTTTGG
*
34022 GGTTCATACCAAACCATATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACAT
1 GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACAT
34084 GGAACTTGTT
Statistics
Matches: 409, Mismatches: 24, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
93 339 0.83
94 70 0.17
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.29
Consensus pattern (93 bp):
GGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCA
TCTTCCAAATTTAATGATTGGTTTTTGG
Found at i:35092 original size:1 final size:1
Alignment explanation
Indices: 35081--35143 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
35071 CTTGACACCC
* * * * * * * *
35081 TTTTTTCTTTTTTCTTTTTTCTTTTTTTTCTTTTTATTTTTCTTTTTATTTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
35144 CTTTCTTCAA
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:35092 original size:7 final size:7
Alignment explanation
Indices: 35080--35147 Score: 70
Period size: 7 Copynumber: 9.6 Consensus size: 7
35070 TCTTGACACC
35080 CTTTTTT
1 CTTTTTT
35087 CTTTTTT
1 CTTTTTT
35094 CTTTTTT
1 CTTTTTT
35101 CTTTTTT
1 CTTTTTT
35108 -TTCTTTT
1 CTT-TTTT
35115 -TATTTTT
1 CT-TTTTT
35122 CTTTTTAT
1 CTTTTT-T
35130 -TTTTTT
1 CTTTTTT
*
35136 TTCTTTTT
1 CT-TTTTT
35144 CTTT
1 CTTT
35148 CTTCAAGCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
6 3 0.06
7 42 0.78
8 9 0.17
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
CTTTTTT
Found at i:35098 original size:6 final size:6
Alignment explanation
Indices: 35082--35147 Score: 68
Period size: 6 Copynumber: 11.5 Consensus size: 6
35072 TTGACACCCT
* *
35082 TTTTTC TTTTTTC TTTTT- TCTTT- TTTTTC TTTTTA TTTTTC TTTTT-
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
35128 ATTTT- TTTTTC TTTTTC TTT
1 TTTTTC TTTTTC TTTTTC TTT
35148 CTTCAAGCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
5 16 0.31
6 29 0.57
7 6 0.12
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:35120 original size:28 final size:28
Alignment explanation
Indices: 35089--35143 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
35079 CCTTTTTTCT
35089 TTTTTCTTTTT-TCTTTTTTTTCTTTTTA
1 TTTTTCTTTTTAT-TTTTTTTTCTTTTTA
35117 TTTTTCTTTTTATTTTTTTTTCTTTTT
1 TTTTTCTTTTTATTTTTTTTTCTTTTT
35144 CTTTCTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.04, C:0.09, G:0.00, T:0.87
Consensus pattern (28 bp):
TTTTTCTTTTTATTTTTTTTTCTTTTTA
Found at i:42608 original size:15 final size:15
Alignment explanation
Indices: 42585--42616 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
42575 TGAAATGAAT
42585 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
42600 AATGTATGTATGCAA
1 AATGAATGTATGCAA
42615 AA
1 AA
42617 AAGGTATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:46678 original size:23 final size:25
Alignment explanation
Indices: 46631--46688 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
46621 TGAAAAATAA
46631 ATAAATAAATATTAAAATAATTTATAT
1 ATAAA-AAATA-TAAAATAATTTATAT
46658 ATAAAAAATATAAAATATTATTTAT-T
1 ATAAAAAATATAAAATA--ATTTATAT
46684 ATAAA
1 ATAAA
46689 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.24
26 11 0.38
27 11 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAAAAAATATAAAATAATTTATAT
Found at i:46689 original size:23 final size:25
Alignment explanation
Indices: 46634--46692 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 25
46624 AAAATAAATA
46634 AATAAATATTAAAATAATTTATATAT
1 AATAAATA-TAAAATAATTTATATAT
* *
46660 AAAAAATATAAAAT-A-TTATTTAT
1 AATAAATATAAAATAATTTATATAT
*
46683 TATAAATATA
1 AATAAATATA
46693 TATATATGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 15 0.52
24 1 0.03
25 6 0.21
26 7 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
AATAAATATAAAATAATTTATATAT
Found at i:46695 original size:27 final size:26
Alignment explanation
Indices: 46631--46696 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
46621 TGAAAAATAA
46631 ATAAATAAATATTAAAATAATTTATAT
1 ATAAATAAATA-TAAAATAATTTATAT
46658 ATAAA-AAATATAAAATATTATTTAT-T
1 ATAAATAAATATAAAATA--ATTTATAT
*
46684 ATAAATATATATA
1 ATAAATAAATATA
46697 TATGACTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 7 0.20
26 11 0.31
27 17 0.49
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
ATAAATAAATATAAAATAATTTATAT
Found at i:48147 original size:3 final size:3
Alignment explanation
Indices: 48141--48198 Score: 75
Period size: 3 Copynumber: 19.7 Consensus size: 3
48131 TAATATTTAT
* *
48141 TAA TAA TAA -AA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
48188 T-A TAAA TAA TA
1 TAA T-AA TAA TA
48199 TTAAAATGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 4 0.08
3 42 0.88
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:48155 original size:21 final size:21
Alignment explanation
Indices: 48129--48200 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
48119 TTGGGCATGT
48129 AATAATATTTATTAATAATAA
1 AATAATATTTATTAATAATAA
* * *
48150 AATAATAATAATT-ATAATTAT
1 AATAATATTTATTAATAA-TAA
* *
48171 AATAATA-ATAATAATAATATA
1 AATAATATTTATTAATAATA-A
48192 AATAATATT
1 AATAATATT
48201 AAAATGAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
20 8 0.21
21 31 0.79
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAATATTTATTAATAATAA
Found at i:48184 original size:24 final size:24
Alignment explanation
Indices: 48128--48185 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
48118 TTTGGGCATG
*
48128 TAATAATATTTATTAATAATAAAA
1 TAATAATAATTATTAATAATAAAA
*
48152 TAATAATAATTA-TAATTATAATAA
1 TAATAATAATTATTAATAATAA-AA
48176 TAATAATAAT
1 TAATAATAAT
48186 AATATAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 8 0.26
24 23 0.74
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATAATAATTATTAATAATAAAA
Found at i:49412 original size:43 final size:46
Alignment explanation
Indices: 49309--49414 Score: 121
Period size: 50 Copynumber: 2.3 Consensus size: 46
49299 AAGATTAGAT
*
49309 TTATTATTTTATTAGGAATTAATGTTAAGTTAAAACATTATTTTTAGTTA
1 TTATTATTTTATTAGGAATTAATG-T-AGTTAAAAC--TATGTTTAGTTA
*
49359 TTATTATTTTATTAGGAATT-A-G-AGTTAAAAC-ATGTTTAGTTTG
1 TTATTATTTTATTAGGAATTAATGTAGTTAAAACTATGTTTAG-TTA
49402 TTATTATTTTATT
1 TTATTATTTTATT
49415 CATTAGTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
42 7 0.13
43 15 0.28
45 9 0.17
48 1 0.02
49 1 0.02
50 20 0.38
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (46 bp):
TTATTATTTTATTAGGAATTAATGTAGTTAAAACTATGTTTAGTTA
Found at i:49684 original size:50 final size:54
Alignment explanation
Indices: 49609--49744 Score: 165
Period size: 59 Copynumber: 2.5 Consensus size: 54
49599 CACACTCCAA
* *
49609 TTTGTATTTTCATCGCGACTAGGAGGG-T-T-GG-TTAGAGCCATATTATCGAG
1 TTTGTCTTTTCATTGCGACTAGGAGGGTTATAGGCTTAGAGCCATATTATCGAG
49659 TTTGTCTTTTCATTGCGACTAGGAGGGTTCGATAGGACTCTTAGAGCCATATTATCGAG
1 TTTGTCTTTTCATTGCGACTAGGAGGGTT--ATAGG---CTTAGAGCCATATTATCGAG
49718 TTT-TCCTTTTCATTGCGACTAGGAGGG
1 TTTGT-CTTTTCATTGCGACTAGGAGGG
49745 GTTCGATAGG
Statistics
Matches: 74, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
50 25 0.34
51 1 0.01
54 1 0.01
55 2 0.03
58 1 0.01
59 44 0.59
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (54 bp):
TTTGTCTTTTCATTGCGACTAGGAGGGTTATAGGCTTAGAGCCATATTATCGAG
Found at i:49732 original size:59 final size:60
Alignment explanation
Indices: 49640--49755 Score: 209
Period size: 59 Copynumber: 1.9 Consensus size: 60
49630 GGAGGGTTGG
49640 TTAGAGCCATATTATCGAGTTTGTCTTTTCATTGCGACTAGGA-GGGTTCGATAGGACTC
1 TTAGAGCCATATTATCGAGTTTGTCTTTTCATTGCGACTAGGAGGGGTTCGATAGGACTC
49699 TTAGAGCCATATTATCGAGTTT-TCCTTTTCATTGCGACTAGGAGGGGTTCGATAGGA
1 TTAGAGCCATATTATCGAGTTTGT-CTTTTCATTGCGACTAGGAGGGGTTCGATAGGA
49756 TACTTATCCA
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
58 1 0.02
59 41 0.75
60 13 0.24
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.35
Consensus pattern (60 bp):
TTAGAGCCATATTATCGAGTTTGTCTTTTCATTGCGACTAGGAGGGGTTCGATAGGACTC
Found at i:55337 original size:24 final size:24
Alignment explanation
Indices: 55310--55419 Score: 125
Period size: 24 Copynumber: 4.6 Consensus size: 24
55300 TTGAATTATA
*
55310 ATCTAATACTTGACATGGATTCTG
1 ATCTGATACTTGACATGGATTCTG
55334 ATCTGATA-TCTGACATGGATTCTG
1 ATCTGATACT-TGACATGGATTCTG
*
55358 ATCTGATACTTGACTTGGATTCTG
1 ATCTGATACTTGACATGGATTCTG
* * *
55382 ATATGTTACTTGACCT-GATTTCTG
1 ATCTGATACTTGACATGGA-TTCTG
* *
55406 ATATGACACTTGAC
1 ATCTGATACTTGAC
55420 CTGATTTATG
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 3 0.04
24 72 0.95
25 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.39
Consensus pattern (24 bp):
ATCTGATACTTGACATGGATTCTG
Found at i:55598 original size:43 final size:43
Alignment explanation
Indices: 55537--55631 Score: 181
Period size: 43 Copynumber: 2.2 Consensus size: 43
55527 GGGCCTTACT
55537 TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA
*
55580 TGGTGTGTTGGTGGGTGTATGGTTCTGTGGAACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA
55623 TGGTGTGTT
1 TGGTGTGTT
55632 TGGTTGGAGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.15, C:0.11, G:0.37, T:0.38
Consensus pattern (43 bp):
TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA
Found at i:57751 original size:18 final size:18
Alignment explanation
Indices: 57728--57773 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
57718 ACCGGTCACA
*
57728 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCATTG
*
57746 ACCCGACCCGATCCATTG
1 ACCCGACCCGACCCATTG
*
57764 AACCGACCCG
1 ACCCGACCCG
57774 TTGACCGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.48, G:0.20, T:0.11
Consensus pattern (18 bp):
ACCCGACCCGACCCATTG
Found at i:58824 original size:147 final size:147
Alignment explanation
Indices: 58617--58912 Score: 547
Period size: 147 Copynumber: 2.0 Consensus size: 147
58607 TATTGATCTG
*
58617 ATAAAAATACTGATGTGCATAAGAAATGCTAGTTTTGCTTAGGAAATACGGATAATCGGTTTTTA
1 ATAAAAATACTGATGTGCATAAGAAATGCTAGTTTTGCTTAGGAAATACGGATAACCGGTTTTTA
* *
58682 GTCTTATGAGGTTTTGTGAAGGATACTAGAAGTCTGTTAAGGGAATCATTTTCAGATCAGAGAGT
66 GTCTTATGAGGGTTTATGAAGGATACTAGAAGTCTGTTAAGGGAATCATTTTCAGATCAGAGAGT
58747 GTTCGAGAAAACAATTA
131 GTTCGAGAAAACAATTA
*
58764 ATAAAAATACTGATGTGCATAAGAAATGCTAGTTTTGCTTAGGAAATGCGGATAACCGGTTTTTA
1 ATAAAAATACTGATGTGCATAAGAAATGCTAGTTTTGCTTAGGAAATACGGATAACCGGTTTTTA
*
58829 GTCTTATGAGGGTTTATGAAGGATACTAGAAGTCTGTTAAGGGAATCATTTTCATATCAGAGAGT
66 GTCTTATGAGGGTTTATGAAGGATACTAGAAGTCTGTTAAGGGAATCATTTTCAGATCAGAGAGT
58894 GTTCGAGAAAACAATTA
131 GTTCGAGAAAACAATTA
58911 AT
1 AT
58913 TATAGGATCT
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
147 144 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (147 bp):
ATAAAAATACTGATGTGCATAAGAAATGCTAGTTTTGCTTAGGAAATACGGATAACCGGTTTTTA
GTCTTATGAGGGTTTATGAAGGATACTAGAAGTCTGTTAAGGGAATCATTTTCAGATCAGAGAGT
GTTCGAGAAAACAATTA
Found at i:60385 original size:24 final size:24
Alignment explanation
Indices: 60358--60473 Score: 155
Period size: 24 Copynumber: 4.8 Consensus size: 24
60348 TTCGATTTGA
60358 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
60382 ATTCTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACATGG
*
60406 ATTCTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
* *
60430 ATTCTGATCTGTTACTTGACCT-G
1 ATTCTGATCTGATACTTGACATGG
* *
60453 ATTTCTAATATGATACTTGAC
1 A-TTCTGATCTGATACTTGAC
60474 CTAATTTATG
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
23 3 0.04
24 79 0.95
25 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:60474 original size:24 final size:24
Alignment explanation
Indices: 60415--60480 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
60405 GATTCTGATC
* * *
60415 TGATACTTGACTTGGA-TTCTGATC
1 TGATACTTGACCT-GATTTCTAATA
*
60439 TGTTACTTGACCTGATTTCTAATA
1 TGATACTTGACCTGATTTCTAATA
*
60463 TGATACTTGACCTAATTT
1 TGATACTTGACCTGATTT
60481 ATGTTTTGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 2 0.06
24 33 0.94
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (24 bp):
TGATACTTGACCTGATTTCTAATA
Found at i:60652 original size:43 final size:43
Alignment explanation
Indices: 60591--60685 Score: 172
Period size: 43 Copynumber: 2.2 Consensus size: 43
60581 GGGCCTTACT
*
60591 TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA
1 TGGTGTGTTAGTGGGTGTATGGTTCTGGGGAACCTACACATTA
*
60634 TGGTGTGTTAGTGGGTGTATGGTTCTGTGGAACCTACACATTA
1 TGGTGTGTTAGTGGGTGTATGGTTCTGGGGAACCTACACATTA
60677 TGGTGTGTT
1 TGGTGTGTT
60686 TGGTTGGAGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.16, C:0.11, G:0.36, T:0.38
Consensus pattern (43 bp):
TGGTGTGTTAGTGGGTGTATGGTTCTGGGGAACCTACACATTA
Found at i:62687 original size:59 final size:59
Alignment explanation
Indices: 62603--62715 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 59
62593 GGTTAGAGCC
* *
62603 ATATTATCGAGTTTGTCTTTTCATTGTGACTATGAGGGTTTGATAGGAAACTTAGAGTT
1 ATATTATCGAGTTTGTCTTTTCATTGAGACTATGAGGGTTCGATAGGAAACTTAGAGTT
*
62662 ATATTATCGAGTTTG-CATTTTCATTGAGACTATGAGGGTTCGATAGGACACTTA
1 ATATTATCGAGTTTGTC-TTTTCATTGAGACTATGAGGGTTCGATAGGAAACTTA
62716 TCCATCTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 1 0.02
59 49 0.98
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.40
Consensus pattern (59 bp):
ATATTATCGAGTTTGTCTTTTCATTGAGACTATGAGGGTTCGATAGGAAACTTAGAGTT
Found at i:65161 original size:18 final size:18
Alignment explanation
Indices: 65120--65157 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
65110 TTATTTTTAC
*
65120 TTTAATTGCTTTTACTTA
1 TTTAATCGCTTTTACTTA
65138 TTTAATCGCTTTTA-TTA
1 TTTAATCGCTTTTACTTA
65155 TTT
1 TTT
65158 TAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATCGCTTTTACTTA
Found at i:66680 original size:22 final size:22
Alignment explanation
Indices: 66652--66700 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
66642 TAATAATTTT
66652 TATCCTCAAAACTTATATATTC
1 TATCCTCAAAACTTATATATTC
66674 TATCCTCAAAACTTATATATTC
1 TATCCTCAAAACTTATATATTC
66696 TATCC
1 TATCC
66701 AGTTAGTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (22 bp):
TATCCTCAAAACTTATATATTC
Found at i:69128 original size:15 final size:15
Alignment explanation
Indices: 69108--69137 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69098 TTGTACTTCC
*
69108 AGATGAAAAGGGAGA
1 AGATGAAAAGAGAGA
69123 AGATGAAAAGAGAGA
1 AGATGAAAAGAGAGA
69138 TACCTGAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (15 bp):
AGATGAAAAGAGAGA
Found at i:69585 original size:22 final size:21
Alignment explanation
Indices: 69558--69724 Score: 190
Period size: 22 Copynumber: 7.6 Consensus size: 21
69548 AAGAAATTAA
*
69558 ATTTATTTTAAAATATAGATTT
1 ATTTATTTTAAAATAT-GATTG
***
69580 ATTTATTTTAAAATATGAAAAA
1 ATTTATTTTAAAATATG-ATTG
69602 ATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAAATATG-ATTG
*
69624 ATTTATTTTAAAATATAGACTG
1 ATTTATTTTAAAATAT-GATTG
69646 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATAT-GATTG
***
69668 ATTTATTTTAAAATATGAAAAA
1 ATTTATTTTAAAATATG-ATTG
*
69690 ATTTATTTTAAATTATGGATTG
1 ATTTATTTTAAAATAT-GATTG
69712 ATTTATTTTAAAA
1 ATTTATTTTAAAA
69725 AAAATTATTA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
21 2 0.02
22 120 0.97
23 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.08, T:0.49
Consensus pattern (21 bp):
ATTTATTTTAAAATATGATTG
Found at i:69604 original size:44 final size:44
Alignment explanation
Indices: 69556--69724 Score: 259
Period size: 44 Copynumber: 3.8 Consensus size: 44
69546 TAAAGAAATT
* *
69556 AAATTTATTTTAAAATATAGATTTATTTATTTTAAAATATGAAA
1 AAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAAA
* *
69600 AAATTTATTTTAAAATATGAATTGATTTATTTTAAAATAT-AGAC
1 AAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGA-AA
**
69644 TGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAAA
1 AAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAAA
*
69688 AAATTTATTTTAAATTATGGATTGATTTATTTTAAAA
1 AAATTTATTTTAAAATATGGATTGATTTATTTTAAAA
69725 AAAATTATTA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 1 0.01
44 110 0.98
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.48
Consensus pattern (44 bp):
AAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAAA
Found at i:69632 original size:66 final size:66
Alignment explanation
Indices: 69556--69724 Score: 239
Period size: 66 Copynumber: 2.6 Consensus size: 66
69546 TAAAGAAATT
*
69556 AAATTTATTTTAAAATATAGATTTATTTATTTTAAAATATGAAAAAATTTATTTTAAAATATGAA
1 AAATTTATTTTAAAATATAGATTGATTTATTTTAAAATATGAAAAAATTTATTTTAAAATATGAA
*
69621 T
66 A
** * * ***
69622 TGATTTATTTTAAAATATAGACTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAA
1 AAATTTATTTTAAAATATAGATTGATTTATTTTAAAATATGAAAAAATTTATTTTAAAATATGAA
69687 A
66 A
* *
69688 AAATTTATTTTAAATTATGGATTGATTTATTTTAAAA
1 AAATTTATTTTAAAATATAGATTGATTTATTTTAAAA
69725 AAAATTATTA
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 89 1.00
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.48
Consensus pattern (66 bp):
AAATTTATTTTAAAATATAGATTGATTTATTTTAAAATATGAAAAAATTTATTTTAAAATATGAA
A
Found at i:70678 original size:3 final size:3
Alignment explanation
Indices: 70670--70715 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
70660 AATTTTTTCA
* *
70670 TAT TAT TAT TTT TAT TAT TAT TAT TAT TA- AAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
70716 AAAATGTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 1 0.03
3 37 0.97
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:70729 original size:2 final size:2
Alignment explanation
Indices: 70722--70778 Score: 89
Period size: 2 Copynumber: 29.0 Consensus size: 2
70712 ATTAAAAATG
70722 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
70764 -A AA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA
70779 CAAGGCCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:72173 original size:2 final size:2
Alignment explanation
Indices: 72166--72204 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
72156 ATTATTTTAT
*
72166 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72205 TGGTTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:78032 original size:16 final size:17
Alignment explanation
Indices: 78006--78037 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77996 AAGAAGAAGG
78006 AAAAAACAAAACAAAAC
1 AAAAAACAAAACAAAAC
78023 AAAAAA-AAAACAAAA
1 AAAAAACAAAACAAAA
78038 AGGAAAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAACAAAACAAAAC
Found at i:83761 original size:76 final size:76
Alignment explanation
Indices: 83580--84219 Score: 1144
Period size: 76 Copynumber: 8.5 Consensus size: 76
83570 CTATTTCCCA
83580 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
83644 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
83655 CATCTGTAAGTCCTACAGTGCATGATGTTTCCTAAAAGCCTTCGGGAGCTTTTTTATGTGTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
83720 AGCCTTAGGGT
66 AGCCTTAGGGT
83731 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
83796 AGCCTTAGGGT
66 AGCCTTAGGGT
*
83807 CATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
83872 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
83883 CATCTATAAGTCCTACAGTGCATGATGTTCCCAAAAAGCCTTCGGGAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
83948 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
83959 CATCTGTAATTCCTACAGTGCATGATGTTCCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
84024 AGCCTTAGGGT
66 AGCCTTAGGGT
*
84035 CATCTGTAAGTCCTACAGTGAATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
84100 AGCCTTAGGGT
66 AGCCTTAGGGT
84111 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
84176 AGCCTTA-GGT
66 AGCCTTAGGGT
* *
84186 CATC--TAAGTCCTTCAGTGCATGATGTTTTCAAAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAA
84220 CCCTCGGGTC
Statistics
Matches: 544, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
73 28 0.05
75 55 0.10
76 461 0.85
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:84297 original size:46 final size:46
Alignment explanation
Indices: 84164--84448 Score: 382
Period size: 46 Copynumber: 6.2 Consensus size: 46
84154 GGGAGCTTTT
* * *
84164 TGATGTTTTC-AAAGCCTT-AGGTCATC--TAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
84206 TGATGTTTTCAAAACCC-TCGGGTCATCTGTAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
84251 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTAAATGCA
1 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
84297 TGATGTTTTCAAAAAAAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTC-----AAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
84348 TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
84394 TGATATTTTCAAAACCCTTCGGGTCACCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
84440 TGATGTTTT
1 TGATGTTTT
84449 AAACATTTCC
Statistics
Matches: 217, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
42 11 0.05
43 12 0.06
45 33 0.15
46 119 0.55
51 42 0.19
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (46 bp):
TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:84367 original size:97 final size:92
Alignment explanation
Indices: 84164--84448 Score: 346
Period size: 97 Copynumber: 3.1 Consensus size: 92
84154 GGGAGCTTTT
* * * * * * *
84164 TGATGTTTTC-AAAGCCTT-AGGTCA--TCTAAGTCCTTCAGTGCATGATGTTTTC-AAAACCCT
1 TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTAAATGCATGATATTTTCAAAAACCTT
*
84224 CGGGTCATCTGTAAGTCCTTCAGTGCA
66 CGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
84251 TGATGTTTTCAAAACCCTTCGGGTCATCTGTAAGCCCTTAAATGCATGATGTTTTCAAAAAAAAA
1 TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTAAATGCATGATATTTTC-----AAAA
*
84316 ACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
61 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
84348 TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTCAGTGCATGATATTTTCAAAACCCTT
1 TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTAAATGCATGATATTTTCAAAAACCTT
*
84413 CGGGTCACCTGTAAGCCCTTCAGTGCA
66 CGGGTCATCTGTAAGCCCTTCAGTGCA
84440 TGATGTTTT
1 TGATGTTTT
84449 AAACATTTCC
Statistics
Matches: 171, Mismatches: 17, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
87 10 0.06
88 7 0.04
89 5 0.03
91 24 0.14
92 42 0.25
97 83 0.49
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (92 bp):
TGATGTTTTCAAAAACCTTCGGGTCATCTCTAAGCCCTTAAATGCATGATATTTTCAAAAACCTT
CGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:84579 original size:3 final size:3
Alignment explanation
Indices: 84571--84609 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
84561 TAATTTTTCA
* *
84571 TAT TAT TAT TAT TAT TAT TAT TAA AAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
84610 ATATATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:84614 original size:2 final size:2
Alignment explanation
Indices: 84607--84640 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
84597 TTATTATTAT
84607 TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84641 CAAGGCCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:87611 original size:3 final size:3
Alignment explanation
Indices: 87605--87666 Score: 64
Period size: 3 Copynumber: 22.3 Consensus size: 3
87595 GGAAAAAGAA
*
87605 AAT AAT AA- AAT AAT AA- AAT AA- AAA AAT AAT AA- AAT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
87648 AAT AAAT AAT AAT AA- AAT A
1 AAT -AAT AAT AAT AAT AAT A
87667 TTAGTTAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 14
0.77 0.02 0.21
Matches are distributed among these distances:
2 12 0.24
3 36 0.71
4 3 0.06
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:87616 original size:8 final size:8
Alignment explanation
Indices: 87603--87666 Score: 85
Period size: 8 Copynumber: 7.8 Consensus size: 8
87593 AAGGAAAAAG
87603 AAAATAAT
1 AAAATAAT
87611 AAAATAAT
1 AAAATAAT
*
87619 AAAATAAA
1 AAAATAAT
87627 AAAATAAT
1 AAAATAAT
87635 AAAATAA-
1 AAAATAAT
87642 AATAATAAT
1 AA-AATAAT
87651 AAATAATAAT
1 -AA-AATAAT
87661 AAAATA
1 AAAATA
87667 TTAGTTAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
7 2 0.04
8 38 0.75
9 2 0.04
10 9 0.18
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATAAT
Found at i:87627 original size:21 final size:21
Alignment explanation
Indices: 87598--87666 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
87588 TGAAGAAGGA
*
87598 AAAAGAAAATAATAAAATAAT
1 AAAATAAAATAATAAAATAAT
*
87619 AAAATAAAAAAATAATAA-AAT
1 AAAATAAAATAATAA-AATAAT
*
87640 AAAATAATAATAA-ATAATAAT
1 AAAATAA-AATAATAAAATAAT
87661 AAAATA
1 AAAATA
87667 TTAGTTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 2 0.05
21 33 0.80
22 6 0.15
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (21 bp):
AAAATAAAATAATAAAATAAT
Found at i:88821 original size:22 final size:22
Alignment explanation
Indices: 88794--88841 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
88784 TTGGACCTGA
* *
88794 AATAAACA-AAATTAAATTAAAT
1 AATAAA-ATAAATAAAATAAAAT
88816 AATAAAATAAATAAAATAAAAT
1 AATAAAATAAATAAAATAAAAT
88838 AATA
1 AATA
88842 TGATATAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
AATAAAATAAATAAAATAAAAT
Found at i:88830 original size:9 final size:9
Alignment explanation
Indices: 88793--88835 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
88783 TTTGGACCTG
*
88793 AAATAAACA
1 AAATAAATA
*
88802 AAATTAAATT
1 AAA-TAAATA
88812 AAAT-AATA
1 AAATAAATA
88820 AAATAAATA
1 AAATAAATA
88829 AAATAAA
1 AAATAAA
88836 ATAATATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 7 0.24
9 15 0.52
10 7 0.24
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAATA
Found at i:88832 original size:17 final size:18
Alignment explanation
Indices: 88801--88834 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
88791 TGAAATAAAC
*
88801 AAAATTAAATTAAATAAT
1 AAAATTAAATAAAATAAT
88819 AAAA-TAAATAAAATAA
1 AAAATTAAATAAAATAA
88835 AATAATATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATTAAATAAAATAAT
Found at i:88973 original size:36 final size:34
Alignment explanation
Indices: 88932--89016 Score: 111
Period size: 35 Copynumber: 2.4 Consensus size: 34
88922 CATAGTTTCC
88932 AAAATGTTTTTAAAAATATTATATAAATTTT-CAAA
1 AAAATGTTTTTAAAAATATTATAT-AATTTTAC-AA
*
88967 ACAAATG-TTTTAAACTATATTATATAATTTTACAA
1 A-AAATGTTTTTAAA-AATATTATATAATTTTACAA
89002 AAAATGTTTTTAAAA
1 AAAATGTTTTTAAAA
89017 CTATATACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
34 5 0.11
35 24 0.55
36 15 0.34
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (34 bp):
AAAATGTTTTTAAAAATATTATATAATTTTACAA
Found at i:89018 original size:36 final size:35
Alignment explanation
Indices: 88898--89064 Score: 136
Period size: 36 Copynumber: 4.8 Consensus size: 35
88888 TATATACTTT
* * *
88898 AAAAAA-GTTTTCAAAACTATATTACAT-AGTTTC
1 AAAAAATGTTTTTAAAACTATATTATATAATTTTC
*
88931 -CAAAATGTTTTTAAAA--ATATTATATAAATTTTC
1 AAAAAATGTTTTTAAAACTATATTATAT-AATTTTC
88964 AAAACAAATG-TTTT-AAACTATATTATATAATTTTAC
1 -AAA-AAATGTTTTTAAAACTATATTATATAATTTT-C
*
89000 AAAAAATGTTTTTAAAACTATATACTATATATGTTTTTC
1 AAAAAATGTTTTTAAAACTATAT--TATATA--ATTTTC
* *
89039 --AAAATGTTTTAAAAACTATATAATAT
1 AAAAAATGTTTTTAAAACTATATTATAT
89065 TTAAACGTTT
Statistics
Matches: 111, Mismatches: 8, Indels: 28
0.76 0.05 0.19
Matches are distributed among these distances:
31 8 0.07
32 4 0.04
33 14 0.13
34 8 0.07
35 22 0.20
36 24 0.22
37 20 0.18
38 6 0.05
39 1 0.01
40 4 0.04
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (35 bp):
AAAAAATGTTTTTAAAACTATATTATATAATTTTC
Found at i:89176 original size:28 final size:30
Alignment explanation
Indices: 89115--89184 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
89105 CGTATTTTCA
89115 AAATG-TTTCAAAAAAACTATATAATATAT
1 AAATGTTTTCAAAAAAACTATATAATATAT
89144 AAATGTTTTCAAAAAAACTATATAA-ATAT
1 AAATGTTTTCAAAAAAACTATATAATATAT
89173 -AATGTTTTCAAA
1 AAATGTTTTCAAA
89185 CATGTTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 12 0.30
29 9 0.22
30 19 0.47
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATGTTTTCAAAAAAACTATATAATATAT
Found at i:89210 original size:37 final size:36
Alignment explanation
Indices: 88899--89211 Score: 184
Period size: 37 Copynumber: 8.8 Consensus size: 36
88889 ATATACTTTA
* * *
88899 AAAAAGTTTTCAAAACTATAT-TACAT-A-GTTTCC
1 AAAATGTTTTCAAAACTATATATATATAATGTTTTC
* *
88932 AAAATGTTTTTAAAA--ATAT-TATATAA-ATTTTC
1 AAAATGTTTTCAAAACTATATATATATAATGTTTTC
*
88964 AAAACAAATGTTTT--AAACTATAT-TATATAAT-TTTAC
1 ---A-AAATGTTTTCAAAACTATATATATATAATGTTTTC
*
89000 AAAAAATGTTTTTAAAACTATATACTATAT-ATGTTTTTC
1 --AAAATGTTTTCAAAACTATATA-TATATAATG-TTTTC
* * *
89039 AAAATGTTTTAAAAACTATATAATATTTAAACGTTTTC
1 AAAATGTTTTCAAAACTATAT-ATATAT-AATGTTTTC
* * *
89077 AAAATG-TTTAAAAACTATATATTATATACGTATTTTC
1 AAAATGTTTTCAAAACTATATA-TATATA-ATGTTTTC
89114 AAAATG-TTTCAAAAAAACTATATAATATATAAATGTTTTC
1 AAAATGTTTTC---AAAACTATAT-ATATAT-AATGTTTTC
*
89154 -AAA-------AAAACTATATAAATATAATGTTTTC
1 AAAATGTTTTCAAAACTATATATATATAATGTTTTC
89182 AAACATGTTTTCAAAACTATATATATATAA
1 AAA-ATGTTTTCAAAACTATATATATATAA
89212 CATTAAATAA
Statistics
Matches: 228, Mismatches: 19, Indels: 62
0.74 0.06 0.20
Matches are distributed among these distances:
28 9 0.04
29 7 0.03
30 11 0.05
31 8 0.04
32 5 0.02
33 13 0.06
34 12 0.05
35 4 0.02
36 35 0.15
37 75 0.33
38 17 0.07
39 9 0.04
40 21 0.09
41 2 0.01
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.41
Consensus pattern (36 bp):
AAAATGTTTTCAAAACTATATATATATAATGTTTTC
Found at i:89965 original size:84 final size:83
Alignment explanation
Indices: 89798--90281 Score: 538
Period size: 84 Copynumber: 5.9 Consensus size: 83
89788 ACTCGAAGGT
* * * * *
89798 GATAACCTTTCTTGACTTGAGCTATTCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAAC
* *
89862 TCAAAGGTCTTTTGTTGGCA
65 TCGAAGGT-ATTTGTTGGCA
* * * * * * *
89882 GACAACCCTTCTAGATTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGTGTAGTCGAACG
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACT
89947 CGAAGGTATTTGATTGGCA
66 CGAAGGTATTTG-TTGGCA
* * * *
89966 GATAA-CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAAC
* *
90030 TCG--GG-GTCT-TTGGCA
65 TCGAAGGTATTTGTTGGCA
*
90045 GATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAAC
* *
90109 TCAAAGGTATTTGGTTGGTA
65 TCGAAGGTATTT-GTTGGCA
* * * *
90129 GATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTTGGAGCTGAGTGTAATCAAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAAC
* *
90194 TCGAAGG--TCT-CTGGCA
65 TCGAAGGTATTTGTTGGCA
* * *
90210 GATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGCTGAGCGTAGTCGAACT
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACT
*
90275 CAAAGGT
66 CGAAGGT
90282 CTTTTGTTCG
Statistics
Matches: 337, Mismatches: 50, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
79 31 0.09
80 61 0.18
81 44 0.13
82 4 0.01
83 38 0.11
84 135 0.40
85 24 0.07
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (83 bp):
GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACT
CGAAGGTATTTGTTGGCA
Found at i:90075 original size:163 final size:162
Alignment explanation
Indices: 89798--90281 Score: 619
Period size: 163 Copynumber: 2.9 Consensus size: 162
89788 ACTCGAAGGT
* * * * * * *
89798 GATAACCTTTCTTGACTTGAGCTATTCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACT
1 GATAACC-TTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAATCGAACT
* * * * * * *
89863 CAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGATTTAAGTTGTGCTGCAAATGATATGCCTTGG
65 C-GAGGTC---T-TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
* *
89928 AGCTGAGTGTAGTCGAACGCGAAGGTATTTGATTGGCA
125 AGCTGAGCGTAGTCGAACGCAAAGGTATTTGATTGGCA
*
89966 GATAACCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
1 GATAACCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAATCGAACT
*
90031 CGGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAGCT
65 CGAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGGAGCT
* * *
90095 GAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
129 GAGCGTAGTCGAACGCAAAGGTATTTGATTGGCA
* *
90129 GATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTTGGAGCTGAGTGTAATCAAAC
1 GATAA-CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTT-GAGCTGAGTGTAATCGAAC
* * *
90194 TCGAAGGTCTCTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGC
64 TCG-AGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGC
*
90259 TGAGCGTAGTCGAACTCAAAGGT
128 TGAGCGTAGTCGAACGCAAAGGT
90282 CTTTTGTTCG
Statistics
Matches: 282, Mismatches: 28, Indels: 15
0.87 0.09 0.05
Matches are distributed among these distances:
163 81 0.29
164 62 0.22
165 78 0.28
167 36 0.13
168 25 0.09
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (162 bp):
GATAACCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAATCGAACTC
GAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGA
GCGTAGTCGAACGCAAAGGTATTTGATTGGCA
Found at i:90262 original size:165 final size:165
Alignment explanation
Indices: 89798--90295 Score: 644
Period size: 165 Copynumber: 3.0 Consensus size: 165
89788 ACTCGAAGGT
* * * * * * * *
89798 GATAACCTTTCTTGACTTGAGCTATTCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGTGTAATCGAAC
* * * * * * *
89862 TCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGATTTAAGTTGTGCTGCAAATGATATGCCTTG
66 TCGAAGGTC---T-TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
* * * * *
89927 GAGCTGAGTGTAGTCGAACGCGAAGGTATTTGATTGGCA
127 GAGCTGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
* *
89966 GATAA-CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGTGTAATCGAAC
*
90030 TCG-GGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAG
66 TCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGGAG
90093 CTGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
130 CTGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
* *
90129 GATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTTGGAGCTGAGTGTAATCAAAC
1 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGTGTAATCGAAC
* * *
90194 TCGAAGGTCTCTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGC
66 TCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGC
* * *
90259 TGAGCGTAGTCGAACTCAAAGGTCTTTTGTTCGTA
131 TGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
90294 GA
1 GA
90296 CACTCCTTCT
Statistics
Matches: 291, Mismatches: 34, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
163 81 0.28
164 63 0.22
165 88 0.30
167 36 0.12
168 23 0.08
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (165 bp):
GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGTGTAATCGAAC
TCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGC
TGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGTA
Found at i:90649 original size:94 final size:94
Alignment explanation
Indices: 90521--91110 Score: 745
Period size: 94 Copynumber: 6.0 Consensus size: 94
90511 TGAAATTGGC
* **
90521 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTAAACTTGTATTGTCTGGA
1 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
*
90586 GCCCAATATCCTTCGTTGTGAAGTTGAAA
66 GTCCAATATCCTTCGTTGTGAAGTTGAAA
* *
90615 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGTGTTGTCTGGA
1 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
90680 GTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAA
66 GTCCAATATCCTTCG-T-T---G-TG-AA---G-T-TGAAA
* *
90721 TTGGGAAATTGTTTATTGATAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
1 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
90786 GTCCAATATCCTTCGTTGTGAAGTTGAAA
66 GTCCAATATCCTTCGTTGTGAAGTTGAAA
*
90815 TTGGGAAATTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-G-
1 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
90878 GTCCAATATCCTTCGTTGTGAAGTTGAAA
66 GTCCAATATCCTTCGTTGTGAAGTTGAAA
* ** * * * *
90907 TTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAGTCAACCGCCCCTTCG-CTGTGAAGTTGAGCT
1 TT-G----G-----GA-AA-TTGTTTATTGACAACCAGCGGTCCCTTCGTC-GTGAAGTTGAACT
* * *
90971 TGTGCTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAA
53 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAA
*
91013 TTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
1 TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
*
91078 GTCCAAAATCCTTCGTTGTGAAGTTGAAA
66 GTCCAATATCCTTCGTTGTGAAGTTGAAA
91107 TTGG
1 TTGG
91111 CTCTGAAATT
Statistics
Matches: 436, Mismatches: 32, Indels: 56
0.83 0.06 0.11
Matches are distributed among these distances:
92 31 0.07
93 2 0.00
94 216 0.50
95 5 0.01
96 4 0.01
97 1 0.00
99 3 0.01
100 4 0.01
101 4 0.01
102 2 0.00
103 3 0.01
104 45 0.10
105 4 0.01
106 112 0.26
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (94 bp):
TTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
GTCCAATATCCTTCGTTGTGAAGTTGAAA
Found at i:90795 original size:106 final size:106
Alignment explanation
Indices: 90610--91230 Score: 703
Period size: 94 Copynumber: 6.1 Consensus size: 106
90600 GTTGTGAAGT
* * *
90610 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGTGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
90675 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
*
90716 TGAAATTGGGAAATTGTTTATTGATAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
90781 CTGGAGTCCAATATCCTTCG-T-T---G-TG-AA---G-T-
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
90810 TGAAATTGGGAAATTGTTTATTGACAACCAGCA-GTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
1 TGAAATTGGGAAATTGTTTATTGACAACCAG-AGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
90874 TCT-G-GTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
65 TCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
* * * ** * * * * *
90914 TGAAATTGAGAAGTTGTTTGTTGACAGTCA-ACCGCCCCTTCG-CTGTGAAGTTGAGCTTGTGCT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGA-GGTCCCTTCGTC-GTGAAGTTGAACTTGCGTT
*
90977 GTCTTGAGTCCAATATCCTTCG-T-T---G-TG-AA---G-T-
64 GTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
* *
91008 TGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
91073 CTGGAGTCCAAAATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
** * * ** * * *
91114 TGAAATTTAGAAGTTGTTTGTTGACAGTCA-ACCG-CCCTTCG-CTGTGAAGTTGAGCTTGTGTT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGA-GGTCCCTTCGTC-GTGAAGTTGAACTTGCGTT
* *
91176 GTCTTGAGTCCAATATCCTTCGTTGTGAAATTGAAATTGGCTC
64 GTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
*
91219 TGAAATTTGGAA
1 TGAAATTGGGAA
91231 GCCTCTTCGT
Statistics
Matches: 438, Mismatches: 43, Indels: 69
0.80 0.08 0.13
Matches are distributed among these distances:
92 15 0.03
93 2 0.00
94 133 0.30
95 5 0.01
96 3 0.01
97 1 0.00
98 2 0.00
99 7 0.02
100 6 0.01
101 4 0.01
102 2 0.00
103 2 0.00
104 57 0.13
105 79 0.18
106 120 0.27
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (106 bp):
TGAAATTGGGAAATTGTTTATTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
Found at i:90813 original size:43 final size:42
Alignment explanation
Indices: 90752--90905 Score: 130
Period size: 43 Copynumber: 3.5 Consensus size: 42
90742 ACCAGAGGTC
90752 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-GAGTCCAATAT
* * * * ** **
90795 CCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCAGT
1 CCTTCGTCGTGAAGTTGAACTTGCG---TTG--T-CTGA-GTCCAATA-T
90845 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG-GTCCAATAT
1 -CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGAGTCCAATAT
*
90887 CCTTCGTTGTGAAGTTGAA
1 CCTTCGTCGTGAAGTTGAA
90906 ATTGGCTCTG
Statistics
Matches: 85, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
41 18 0.21
42 1 0.01
43 26 0.31
45 2 0.02
46 4 0.05
48 6 0.07
49 5 0.06
50 1 0.01
51 22 0.26
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (42 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGAGTCCAATAT
Found at i:90822 original size:200 final size:200
Alignment explanation
Indices: 90486--91215 Score: 1045
Period size: 200 Copynumber: 3.7 Consensus size: 200
90476 TATTGTTCCA
* **
90486 AGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCT-TG-----G-GAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
* * * * *
90544 CAGCGGTCCCTTCG-TCGTGAAGTTAAACTTGTATTGTCTGGAGCCCAATATCCTTCGTTGTGAA
66 CAACCGTCCCTTCGCT-GTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
90608 GTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGTGTT
130 GTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
90673 GTCTGG
195 GTCTGG
* *
90679 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGATAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
* *
90744 CAGA-GGTCCCTTCG-TCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGA
66 CA-ACCGTCCCTTCGCT-GTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGA
*
90807 AGTTGAAATTGGGAAATTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGT
129 AGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
90872 TGTCT-G
194 TGTCTGG
* * **
90878 -GTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAGT
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
* * * *
90942 CAACCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTCGTTGTGAAG
66 CAACCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
91007 TTGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTG
131 TTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
91072 TCTGG
196 TCTGG
* * * * **
91077 AGTCCAAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTTAGAAGTTGTTTGTTGACAGT
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
* * *
91142 CAACCG-CCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAA
66 CAACCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
91206 TTGAAATTGG
131 TTGAAATTGG
91216 CTCTGAAATT
Statistics
Matches: 495, Mismatches: 30, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
193 33 0.07
194 2 0.00
197 1 0.00
198 179 0.36
199 70 0.14
200 210 0.42
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (200 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
CAACCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
TTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
TCTGG
Found at i:91225 original size:105 final size:105
Alignment explanation
Indices: 91043--91231 Score: 308
Period size: 105 Copynumber: 1.8 Consensus size: 105
91033 AACCAGCGAT
*
91043 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCGTTGTGAAGTTGAAAT
1 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCGTTGTGAAATTGAAAT
91108 TGGCTCTGAAATTTAGAAGTTGTTTGTTGACAGTCAACCG
66 TGGCTCTGAAATTTAGAAGTTGTTTGTTGACAGTCAACCG
* * * *
91148 CCCTTCG-CTGTGAAGTTGAGCTTGTGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAATTGAAA
1 CCCTTCGTC-GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCGTTGTGAAATTGAAA
*
91212 TTGGCTCTGAAATTTGGAAG
65 TTGGCTCTGAAATTTAGAAG
91232 CCTCTTCGTC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 1 0.01
105 76 0.99
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.35
Consensus pattern (105 bp):
CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAATCCTTCGTTGTGAAATTGAAAT
TGGCTCTGAAATTTAGAAGTTGTTTGTTGACAGTCAACCG
Found at i:95486 original size:18 final size:18
Alignment explanation
Indices: 95465--95499 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95455 TGAAGAAGGA
95465 AAAACAAAATAATAAAAT
1 AAAACAAAATAATAAAAT
*
95483 AAAATAAAATAATAAAA
1 AAAACAAAATAATAAAA
95500 ACAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAACAAAATAATAAAAT
Found at i:96935 original size:5 final size:5
Alignment explanation
Indices: 96922--96971 Score: 59
Period size: 5 Copynumber: 10.4 Consensus size: 5
96912 GAAAAAAACA
* * *
96922 AAAAT -AAAT GAAAT TAAAT TAAAT AAAAT -AAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
96970 AA
1 AA
96972 TATGATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 8 0.20
5 33 0.80
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:96953 original size:14 final size:14
Alignment explanation
Indices: 96926--96967 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
96916 AAAACAAAAA
*
96926 TAAATGAAATTAAAT
1 TAAAT-AAAATAAAT
96941 TAAATAAAATAAAT
1 TAAATAAAATAAAT
*
96955 AAAATAAAATAAA
1 TAAATAAAATAAA
96968 ATAATATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAATAAAATAAAT
Found at i:96968 original size:19 final size:19
Alignment explanation
Indices: 96922--96971 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
96912 GAAAAAAACA
*
96922 AAAAT-AAATGAAATTAAAT
1 AAAATAAAAT-AAATAAAAT
*
96941 TAAATAAAATAAATAAAAT
1 AAAATAAAATAAATAAAAT
96960 AAAATAAAATAA
1 AAAATAAAATAA
96972 TATGATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAATAAAATAAATAAAAT
Found at i:97092 original size:38 final size:35
Alignment explanation
Indices: 97050--97319 Score: 147
Period size: 38 Copynumber: 7.1 Consensus size: 35
97040 TTTTCAAAAC
97050 TATATATTACATAGTTTCCAAAATGTTTTTAAAAATA
1 TATATATTA-AT-GTTTCCAAAATGTTTTTAAAAATA
*
97087 T-TATA-TAA-GTTTTCCAAAAAAATGTTTTTAAAACTA
1 TATATATTAATG-TTTCC---AAAATGTTTTTAAAAATA
* *
97123 TATATTATATAAT-TTTACAAAAAATGTTTTTAAAACTA
1 TATA-TAT-TAATGTTT-C-CAAAATGTTTTTAAAAATA
*
97161 TATACTA-TATATGTTTTCAAAATG-TTTTAAAAACTA
1 TATA-TATTA-ATGTTTCCAAAATGTTTTTAAAAA-TA
* * * *
97197 TATAATATTTAAACGTTTTCAAAATGTTTTCAAAACTA
1 TAT-ATA-TT-AATGTTTCCAAAATGTTTTTAAAAATA
* *
97235 TATATTATATACATGTTTTCAAAATGTTTTCAAAAAAACTA
1 TATA-TAT-TA-ATGTTTCCAAAATGTTTT--TAAAAA-TA
* * *
97276 TATAATATATAAATGTTTTCAAACATGTTTTCAAAACTA
1 TAT-ATAT-T-AATGTTTCCAAA-ATGTTTTTAAAAATA
97315 TATAT
1 TATAT
97320 TATATATATT
Statistics
Matches: 191, Mismatches: 14, Indels: 55
0.73 0.05 0.21
Matches are distributed among these distances:
32 1 0.01
33 5 0.03
34 1 0.01
35 10 0.05
36 37 0.19
37 9 0.05
38 70 0.37
39 16 0.08
40 12 0.06
41 21 0.11
42 9 0.05
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.43
Consensus pattern (35 bp):
TATATATTAATGTTTCCAAAATGTTTTTAAAAATA
Found at i:98111 original size:84 final size:84
Alignment explanation
Indices: 97990--98490 Score: 536
Period size: 84 Copynumber: 6.0 Consensus size: 84
97980 AAGGTCTTTA
** * * * * * *
97990 GCAGATAACCCTTCTTAACATGAGCTATTCTGCAAATGATGTGTCGTT-GAGCTAAGCGTAGTCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
98054 AACTCAAAGGTCTTTTGTTG
65 AACTCAAAGGTCTTTTGTTG
* * * *
98074 GCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
* * *
98139 ACTCGAAGGTCTTTTATTT
66 ACTCAAAGGTCTTTTGTTG
* * * * *
98158 GCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
*** *
98223 AACTCGGGGGTC----ATTG
65 AACTCAAAGGTCTTTTGTTG
* * * * ** *
98239 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATAATGTTCCGTT-GAGCTGAGATTAGTCC
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCG
*
98303 AACTCAAAGGTCTTTGGTTG
65 AACTCAAAGGTCTTTTGTTG
* * *
98323 GCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTTGGAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
* *
98388 AACTCGAAGGTC---T-CTG
65 AACTCAAAGGTCTTTTGTTG
* * *
98404 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTAAGCGTAGTCGA
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
98469 ACTCAAAGGTCTTTTGTTG
66 ACTCAAAGGTCTTTTGTTG
98488 GCA
1 GCA
98491 AACACTCCTT
Statistics
Matches: 343, Mismatches: 61, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
80 51 0.15
81 84 0.24
83 4 0.01
84 152 0.44
85 52 0.15
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (84 bp):
GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
ACTCAAAGGTCTTTTGTTG
Found at i:98272 original size:165 final size:164
Alignment explanation
Indices: 98071--98490 Score: 599
Period size: 165 Copynumber: 2.5 Consensus size: 164
98061 AGGTCTTTTG
* * * * * *
98071 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
* * * *
98136 CGAACTCGAAGGTCTTTTATTTGCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTG
66 CGAACTCAAAGGTCTTTTATTGGCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTG
**
98201 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC
131 CCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC
* * **
98235 ATTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATAATGTTCCGTT-GAGCTGAGATTA
1 -TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTA
* **
98299 GTCCAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATG
64 GTCGAACTCAAAGGTCTTTTATTGGCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATG
* *
98364 TGCCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTC
129 TGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC
*
98400 TCTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTAAGCGTAG
1 T-TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
*
98465 TCGAACTCAAAGGTCTTTTGTTGGCA
65 TCGAACTCAAAGGTCTTTTATTGGCA
98491 AACACTCCTT
Statistics
Matches: 224, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
164 3 0.01
165 219 0.98
166 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (164 bp):
TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
CGAACTCAAAGGTCTTTTATTGGCAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTG
CCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC
Found at i:98309 original size:249 final size:246
Alignment explanation
Indices: 97959--98448 Score: 651
Period size: 249 Copynumber: 2.0 Consensus size: 246
97949 TTTGCCTCTG
* * * *
97959 AGCTGAATATAATCGAACTCGAAGGTCTTTAGCAGATAACCCTTCTTAACATGAGCTATTCTGCA
1 AGCTGAATATAATCGAACTCGAAGGTCATTAGCAGATAACCCTTCTCAACATAAGCTATGCTGCA
* * * *
98024 AATGATGTGTCGTTGAGCTAAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCT
66 AATAATGTGTCGTTGAGCTAAGAGTAGTCCAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
* * *
98089 AGACTTAAGTTGTGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
131 AGACTTAAGTTATGCTACAAATGATATGCCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC---
* * * *
98153 TATTTGCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCCTCGA
193 T-CTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGA
* * ** * * * *
98208 AGCTGAGTGTAATCGAACTCGGGGGTCATTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
1 AGCTGAATATAATCGAACTCGAAGGTCATTAGCAGATAACCCTTCTCAACATAAGCTATGCTGCA
* * *
98273 AATAATGT-TCCGTTGAGCTGAGATTAGTCCAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
66 AATAATGTGT-CGTTGAGCTAAGAGTAGTCCAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
* * *
98337 TCGACTTAAGTTATGCTACAAATGATGTGCCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTC
130 TAGACTTAAGTTATGCTACAAATGATATGCCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTC
*
98402 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
195 TGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
98449 TTGGAGCTAA
Statistics
Matches: 209, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
246 43 0.21
247 1 0.00
248 1 0.00
249 133 0.64
250 31 0.15
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (246 bp):
AGCTGAATATAATCGAACTCGAAGGTCATTAGCAGATAACCCTTCTCAACATAAGCTATGCTGCA
AATAATGTGTCGTTGAGCTAAGAGTAGTCCAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
AGACTTAAGTTATGCTACAAATGATATGCCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTCT
GGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGA
Found at i:101433 original size:16 final size:17
Alignment explanation
Indices: 101412--101446 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
101402 GAAAATAACA
101412 AAATGCA-AAATGTCTG
1 AAATGCAGAAATGTCTG
101428 AAATGCATGAAATGTCTG
1 AAATGCA-GAAATGTCTG
101446 A
1 A
101447 GGCATTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (17 bp):
AAATGCAGAAATGTCTG
Found at i:102513 original size:65 final size:65
Alignment explanation
Indices: 102432--102590 Score: 291
Period size: 65 Copynumber: 2.4 Consensus size: 65
102422 ATTCCCTTAT
* *
102432 GCCCGCACGGTGAATAAATTCACACGAAGACATAAGGTATATGAATCCCGAAGGTTACTTGCTAG
1 GCCCGCACGGTGAATAAATTCACACGAAGACATAAGGTATATGAATACCGAAGGCTACTTGCTAG
102497 GCCCGCACGGTGAATAAATTCACACGAAGACATAAGGTATATGAATACCGAAGGCTACTTGCTAG
1 GCCCGCACGGTGAATAAATTCACACGAAGACATAAGGTATATGAATACCGAAGGCTACTTGCTAG
*
102562 GCCCACACGGTGAATAAATTCACACGAAG
1 GCCCGCACGGTGAATAAATTCACACGAAG
102591 GCGTCGCTTT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 91 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (65 bp):
GCCCGCACGGTGAATAAATTCACACGAAGACATAAGGTATATGAATACCGAAGGCTACTTGCTAG
Found at i:103087 original size:6 final size:6
Alignment explanation
Indices: 103076--103102 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
103066 TTATTTGCGA
103076 AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAA
103103 AAACTTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:103263 original size:8 final size:8
Alignment explanation
Indices: 103250--103287 Score: 58
Period size: 8 Copynumber: 4.5 Consensus size: 8
103240 AAGGAAAAAG
103250 AAAATAAT
1 AAAATAAT
103258 AAAATAAT
1 AAAATAAT
103266 AAAATAAAAT
1 AAAAT--AAT
103276 AAAATAAT
1 AAAATAAT
103284 AAAA
1 AAAA
103288 CCCAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 20 0.71
10 8 0.29
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATAAT
Found at i:103271 original size:13 final size:13
Alignment explanation
Indices: 103245--103287 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
103235 TGAAGAAGGA
*
103245 AAAAGAAAATAAT
1 AAAATAAAATAAT
103258 AAAATAATAA-AAT
1 AAAATAA-AATAAT
103271 AAAATAAAATAAT
1 AAAATAAAATAAT
103284 AAAA
1 AAAA
103288 CCCAATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 2 0.07
13 23 0.85
14 2 0.07
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (13 bp):
AAAATAAAATAAT
Found at i:104756 original size:10 final size:10
Alignment explanation
Indices: 104725--104775 Score: 79
Period size: 10 Copynumber: 5.3 Consensus size: 10
104715 AAAACAAAAA
*
104725 TAAATGAAAT
1 TAAATTAAAT
104735 TAAATT-AA-
1 TAAATTAAAT
104743 TAAATTAAAT
1 TAAATTAAAT
104753 TAAATTAAAT
1 TAAATTAAAT
104763 TAAATTAAAT
1 TAAATTAAAT
104773 TAA
1 TAA
104776 TATGATATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
8 6 0.16
9 4 0.11
10 28 0.74
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
TAAATTAAAT
Found at i:104958 original size:38 final size:36
Alignment explanation
Indices: 104837--105141 Score: 248
Period size: 38 Copynumber: 8.1 Consensus size: 36
104827 TATATACTTT
* * *
104837 AAAAAAGTTTTCAAAACTATATATTACAT-AGTTTC
1 AAAAATGTTTTCAAAACTATATATTATATAATTTTC
* *
104872 CAAAATGTTTT-TAAA--A-ATATTATATAAGTTTTC
1 AAAAATGTTTTCAAAACTATATATTATATAA-TTTTC
*
104905 AAAAAAAATGTTTTTAAAACTATATATTATATAATTTTAC
1 ---AAAAATGTTTTCAAAACTATATATTATATAATTTT-C
* * *
104945 AAAAAATGTTTTTAAAACTATATACTATATATGTTTTC
1 -AAAAATGTTTTCAAAACTATATATTATATA-ATTTTC
* * *
104983 -AAAATGTTTTAAAAACTATATAATATTTAAACGTTTTC
1 AAAAATGTTTTCAAAACTATATATTATAT-AA--TTTTC
105021 -AAAATGTTTTCAAAACTATATATTATATACGTATTTTC
1 AAAAATGTTTTCAAAACTATATATTATATA---ATTTTC
*
105059 -AAAATGTTTTCAAAAAAACTATATAATATATAAATGTTTTC
1 AAAAATGTTTTC---AAAACTATATATTATAT-AA--TTTTC
*
105100 AAACATGTTTTCAAAACTATATATTATATATATTTTC
1 AAAAATGTTTTCAAAACTATATATTATATA-ATTTTC
105137 AAAAA
1 AAAAA
105142 CCATTTACAA
Statistics
Matches: 225, Mismatches: 20, Indels: 48
0.77 0.07 0.16
Matches are distributed among these distances:
31 8 0.04
32 2 0.01
33 4 0.02
34 3 0.01
35 9 0.04
36 35 0.16
37 14 0.06
38 78 0.35
39 27 0.12
40 13 0.06
41 21 0.09
42 11 0.05
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (36 bp):
AAAAATGTTTTCAAAACTATATATTATATAATTTTC
Found at i:109499 original size:22 final size:23
Alignment explanation
Indices: 109471--109520 Score: 84
Period size: 22 Copynumber: 2.2 Consensus size: 23
109461 TAAAAAAATT
*
109471 CAGAATCGAAAAA-TCTGTTTAC
1 CAGAATCGAAAAACTATGTTTAC
109493 CAGAATCGAAAAACTATGTTTAC
1 CAGAATCGAAAAACTATGTTTAC
109516 CAGAA
1 CAGAA
109521 CCAGAAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (23 bp):
CAGAATCGAAAAACTATGTTTAC
Found at i:109530 original size:23 final size:23
Alignment explanation
Indices: 109471--109528 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
109461 TAAAAAAATT
* *
109471 CAGAATCGAAAAA-TCTGTTTAC
1 CAGAACCGAAAAACTATGTTTAC
*
109493 CAGAATCGAAAAACTATGTTTAC
1 CAGAACCGAAAAACTATGTTTAC
109516 CAGAACCAGAAAA
1 CAGAACC-GAAAA
109529 CTCTTATTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 13 0.41
23 14 0.44
24 5 0.16
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.21
Consensus pattern (23 bp):
CAGAACCGAAAAACTATGTTTAC
Found at i:109917 original size:21 final size:22
Alignment explanation
Indices: 109869--109922 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
109859 GTTTCGTTGT
* * *
109869 TTGGTACTTGTTCCACCGCTAT
1 TTGGTACCTGTTCCACCACTAG
109891 TTGGTACCTGTTCCACCACT-G
1 TTGGTACCTGTTCCACCACTAG
*
109912 TTGGTAACTGT
1 TTGGTACCTGT
109923 CCGGCCAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (22 bp):
TTGGTACCTGTTCCACCACTAG
Found at i:117546 original size:15 final size:15
Alignment explanation
Indices: 117526--117558 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
117516 AGCAAGTGTG
117526 AATGC-TCTACAAGAT
1 AATGCTTCT-CAAGAT
117541 AATGCTTCTCAAGAT
1 AATGCTTCTCAAGAT
117556 AAT
1 AAT
117559 AATAATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (15 bp):
AATGCTTCTCAAGAT
Found at i:118755 original size:19 final size:19
Alignment explanation
Indices: 118731--118775 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
118721 TTTGCTAGTA
118731 TGCCTCATGTTGCAGACCT
1 TGCCTCATGTTGCAGACCT
118750 TGCCTCATGTTGCAGACCT
1 TGCCTCATGTTGCAGACCT
118769 TGCCTCA
1 TGCCTCA
118776 AAGGTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.33, G:0.20, T:0.31
Consensus pattern (19 bp):
TGCCTCATGTTGCAGACCT
Found at i:120490 original size:2 final size:2
Alignment explanation
Indices: 120483--120556 Score: 127
Period size: 2 Copynumber: 38.5 Consensus size: 2
120473 AAAAGAGTGT
120483 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120525 TA TA TA TA TA TA TA T- TA TA TA -A TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120557 TAATATTGCT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
1 3 0.04
2 66 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121132 original size:22 final size:21
Alignment explanation
Indices: 121107--121159 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
121097 AATAATATTT
121107 ATAATATTATTTAATAAATC-
1 ATAATATTATTTAATAAATCA
* * *
121127 A-AATAATTATATAATATATCT
1 ATAAT-ATTATTTAATAAATCA
121148 ATAATATTATTT
1 ATAATATTATTT
121160 TTTTAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 3 0.11
20 14 0.52
21 7 0.26
22 3 0.11
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
ATAATATTATTTAATAAATCA
Found at i:123051 original size:2 final size:2
Alignment explanation
Indices: 123044--123119 Score: 143
Period size: 2 Copynumber: 38.0 Consensus size: 2
123034 CAGGCGATTA
*
123044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123120 GTTTTAAGTT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:124194 original size:22 final size:22
Alignment explanation
Indices: 124163--124233 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
124153 ATTCACAAAT
**
124163 GTGTTCATTTAGCATTCGTTTA
1 GTGTTCATTTAGCATTTATTTA
*
124185 GTG-TCTATTTAGCGTTTATTTA
1 GTGTTC-ATTTAGCATTTATTTA
*
124207 GTGTTCGTTTAGCATTTATTTA
1 GTGTTCATTTAGCATTTATTTA
124229 GTGTT
1 GTGTT
124234 TGTTTATTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 2 0.05
22 38 0.90
23 2 0.05
ACGTcount: A:0.17, C:0.10, G:0.20, T:0.54
Consensus pattern (22 bp):
GTGTTCATTTAGCATTTATTTA
Found at i:124214 original size:33 final size:33
Alignment explanation
Indices: 124177--124250 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
124167 TCATTTAGCA
**
124177 TTCGTTTAGTGTCTATTTAGCGTTTATTTAGTG
1 TTCGTTTAGCATCTATTTAGCGTTTATTTAGTG
* * * *
124210 TTCGTTTAGCATTTATTTAGTGTTTGTTTATTG
1 TTCGTTTAGCATCTATTTAGCGTTTATTTAGTG
124243 TTCGTTTA
1 TTCGTTTA
124251 TTATTCGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.15, C:0.08, G:0.19, T:0.58
Consensus pattern (33 bp):
TTCGTTTAGCATCTATTTAGCGTTTATTTAGTG
Found at i:124262 original size:11 final size:11
Alignment explanation
Indices: 124235--124268 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
124225 TTTAGTGTTT
*
124235 GTTTATTGTTC
1 GTTTATTATTC
124246 GTTTATTATTC
1 GTTTATTATTC
124257 GTTTATATATTC
1 GTTTAT-TATTC
124269 AATTTTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.18, C:0.09, G:0.12, T:0.62
Consensus pattern (11 bp):
GTTTATTATTC
Found at i:127886 original size:80 final size:81
Alignment explanation
Indices: 127713--127948 Score: 295
Period size: 80 Copynumber: 3.0 Consensus size: 81
127703 TAGAATAACC
* * *
127713 TCATTTGCTTTTCATTGACATTTCACATCAACTCAAATAAA-ATGAAAATTTTAGAGAGT-C-AT
1 TCATTTGCTTTTCATTGACATTTCACATCAACTCAAATAAACTTAAAAATTTTAGAGAGTCCGAG
*
127775 AATCTATACTATTCAG
66 AATCTACACTATTCAG
** * *
127791 TCATTTATTTTTCATTGATA-TTCACATCAACTCAGATAAACTTAAAAATTTTAGAGAGTCCGAG
1 TCATTTGCTTTTCATTGACATTTCACATCAACTCAAATAAACTTAAAAATTTTAGAGAGTCCGAG
127855 AATCTACACTATTACA-
66 AATCTACACTATT-CAG
* * * * *
127871 TCTTTTGCTTTTCATTGACATTTCACATC-ACACATATAAACTTAAAAAATTTAGAGAGTCAGAG
1 TCATTTGCTTTTCATTGACATTTCACATCAACTCAAATAAACTTAAAAATTTTAGAGAGTCCGAG
*
127935 AATCTACATTATTC
66 AATCTACACTATTC
127949 TACAAAATTA
Statistics
Matches: 136, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
77 19 0.14
78 33 0.24
79 2 0.01
80 72 0.53
81 10 0.07
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (81 bp):
TCATTTGCTTTTCATTGACATTTCACATCAACTCAAATAAACTTAAAAATTTTAGAGAGTCCGAG
AATCTACACTATTCAG
Found at i:129401 original size:15 final size:15
Alignment explanation
Indices: 129381--129428 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
129371 GACATTACCT
129381 GCCCCGCATCCGCCC
1 GCCCCGCATCCGCCC
*
129396 GCCCCGCATCCGCCT
1 GCCCCGCATCCGCCC
*
129411 GCCCCACATCCGCCC
1 GCCCCGCATCCGCCC
129426 GCC
1 GCC
129429 TAACCAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.08, C:0.65, G:0.19, T:0.08
Consensus pattern (15 bp):
GCCCCGCATCCGCCC
Found at i:131185 original size:31 final size:31
Alignment explanation
Indices: 131127--131281 Score: 235
Period size: 31 Copynumber: 5.0 Consensus size: 31
131117 CCCGAAGGAC
* * *
131127 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
131158 CAGT-CATATGTCCCGAAGGGACATAGGTAAA
1 CAGTCCATATGTCCCGAA-GAACATAGGTAAA
131189 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
131220 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
131251 CAGTCCATATGT-CCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
131281 C
1 C
131282 CCTCGACCCT
Statistics
Matches: 116, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
30 29 0.25
31 74 0.64
32 13 0.11
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:135314 original size:31 final size:31
Alignment explanation
Indices: 135276--135431 Score: 251
Period size: 31 Copynumber: 5.0 Consensus size: 31
135266 CCCGAAGGAC
* * *
135276 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
135307 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
135338 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
135369 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
135400 CAGTCCATATGTCCTGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
135431 C
1 C
135432 CCTCGACCCT
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
31 117 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:136381 original size:21 final size:21
Alignment explanation
Indices: 136357--136401 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
136347 TATTGTTCGT
* *
136357 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
136378 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
136399 TTG
1 TTG
136402 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:137306 original size:10 final size:10
Alignment explanation
Indices: 137273--137307 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
137263 AATTTTTTCA
137273 AAATTAAAAT
1 AAATTAAAAT
*
137283 AAAATAAAAT
1 AAATTAAAAT
*
137293 AAATTAAATT
1 AAATTAAAAT
137303 AAATT
1 AAATT
137308 TACTGTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:148921 original size:81 final size:81
Alignment explanation
Indices: 148802--148969 Score: 336
Period size: 81 Copynumber: 2.1 Consensus size: 81
148792 TGACCTCTTT
148802 TTTAATGGAAAAAAAATCAAATAATGCAGTGTCGTTATCTATTTGCAAGTATGCAACTCAATTGA
1 TTTAATGGAAAAAAAATCAAATAATGCAGTGTCGTTATCTATTTGCAAGTATGCAACTCAATTGA
148867 TGATGGTATTACAAGA
66 TGATGGTATTACAAGA
148883 TTTAATGGAAAAAAAATCAAATAATGCAGTGTCGTTATCTATTTGCAAGTATGCAACTCAATTGA
1 TTTAATGGAAAAAAAATCAAATAATGCAGTGTCGTTATCTATTTGCAAGTATGCAACTCAATTGA
148948 TGATGGTATTACAAGA
66 TGATGGTATTACAAGA
148964 TTTAAT
1 TTTAAT
148970 CATAAAAAGC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (81 bp):
TTTAATGGAAAAAAAATCAAATAATGCAGTGTCGTTATCTATTTGCAAGTATGCAACTCAATTGA
TGATGGTATTACAAGA
Found at i:149352 original size:13 final size:13
Alignment explanation
Indices: 149334--149358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
149324 TCGGATTTTT
149334 TTTTAACCGGTTA
1 TTTTAACCGGTTA
149347 TTTTAACCGGTT
1 TTTTAACCGGTT
149359 TGGAGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTTAACCGGTTA
Found at i:149403 original size:24 final size:25
Alignment explanation
Indices: 149376--149429 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
149366 AAAAACTTAG
* *
149376 ACCGGTTTTTTTACCGG-ATAAAAA
1 ACCGGTTTTTTAACCGGAAAAAAAA
149400 ACCGG-TTTTTAACCGGAAAAAAAA
1 ACCGGTTTTTTAACCGGAAAAAAAA
149424 ACCGGT
1 ACCGGT
149430 CTGGGTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (25 bp):
ACCGGTTTTTTAACCGGAAAAAAAA
Found at i:151735 original size:21 final size:21
Alignment explanation
Indices: 151711--151750 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
151701 TTTATTTTAT
151711 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
151732 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
151751 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:151798 original size:33 final size:33
Alignment explanation
Indices: 151745--151843 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
151735 TTTGTTTCAA
151745 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
151777 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
151810 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
151843 T
1 T
151844 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:151872 original size:13 final size:13
Alignment explanation
Indices: 151829--151883 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
151819 TTGGAAGTAT
151829 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
151842 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
151856 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
151869 TTAAGTATTTGAA
1 TTAAGTATTTCAA
151882 TT
1 TT
151884 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Done.