Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005837.1 Hibiscus syriacus cultivar Beakdansim tig00013681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94097

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1559--1584
9
2.9
9
100
0
52
34
19
23
23
1.96
7952--7986
17
2.0
18
88
5
54
20
20
5
54
1.64
13897--13930
15
2.3
15
89
0
50
55
20
5
17
1.62
23413--23520
43
2.5
43
87
3
146
26
21
9
42
1.83
25588--25622
13
2.8
13
91
4
54
57
0
0
42
0.99
29292--29362
29
2.4
30
80
7
81
57
1
0
40
1.07
38415--38478
31
2.1
31
84
0
83
20
28
3
48
1.64
52182--52549
46
8.0
46
89
2
515
22
22
13
42
1.87
52247--52411
20
7.3
20
66
22
69
20
22
14
43
1.88
52472--52556
20
4.0
20
71
16
62
22
25
11
40
1.88
55813--55883
20
3.2
20
68
21
61
19
23
8
47
1.77
55812--56194
46
8.3
46
89
0
550
21
20
12
44
1.85
56017--56187
26
7.3
26
64
22
117
22
22
12
42
1.87
56036--56153
20
5.3
20
68
21
74
22
25
12
39
1.89
60024--60229
74
2.8
74
79
4
197
38
4
4
51
1.43
60295--60455
76
2.1
76
82
7
186
51
4
4
39
1.43
62757--62930
95
1.8
94
82
4
224
37
12
21
28
1.89
63347--63636
45
6.4
45
89
4
415
34
11
25
29
1.91
66047--66087
22
1.9
22
85
5
57
43
2
0
53
1.13
68991--69049
27
2.3
26
82
5
66
62
5
0
32
1.17
73499--73547
13
3.6
14
76
15
50
42
2
0
55
1.11
73485--73536
25
2.1
25
82
13
63
46
0
3
50
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73722--73753
2
16.0
2
100
0
64
50
0
0
50
1.00
74776--74864
23
3.6
24
79
15
85
75
1
6
16
1.08
74778--74887
6
18.0
6
76
15
66
73
0
4
20
1.06
74790--74864
15
4.8
15
81
14
71
76
0
6
17
1.00
74778--74885
23
4.6
21
75
20
74
74
0
4
20
1.06
74806--74903
9
9.8
9
74
21
56
71
2
3
23
1.11
74828--74887
15
4.1
14
81
16
68
73
0
1
25
0.93
75080--75156
3
26.3
3
75
17
65
68
0
2
28
1.02
77104--77225
43
2.9
41
83
7
147
22
18
28
30
1.97
81542--81580
18
2.2
18
100
0
78
5
10
0
84
0.76
91847--91896
15
3.2
16
83
10
59
74
0
10
16
1.08
91829--91910
41
2.1
39
81
9
94
74
1
8
15
1.12
91880--91930
18
2.8
19
77
19
56
70
0
7
21
1.12
91857--91930
15
4.9
14
78
17
51
71
0
8
20
1.11
92123--92171
8
6.1
8
80
7
55
69
0
4
26
1.06
92120--92177
15
3.9
14
82
13
62
70
0
3
25
1.03

Tables:   1

The End!