genome.fa.s5838.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005838.1 Hibiscus syriacus cultivar Beakdansim tig00013687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146289

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1555--1689	16	8.5	16	96	0	245	37	11	19	32	1.87
3173--3222	2	25.0	2	100	0	100	50	0	0	50	1.00
3899--3945	24	2.0	24	86	0	67	46	2	0	51	1.13
3996--4044	20	2.4	21	80	10	57	40	2	6	51	1.38
4492--4600	4	25.8	4	73	10	65	30	3	4	61	1.33
4492--4600	30	3.5	29	77	14	110	30	3	4	61	1.33
4513--4600	34	2.6	34	83	0	113	32	3	4	59	1.35
8300--8361	21	2.7	23	80	11	83	27	17	19	35	1.94
25404--25457	20	2.8	18	73	13	54	53	0	0	46	1.00
25404--25457	19	2.8	19	80	5	56	53	0	0	46	1.00
25394--25451	19	2.9	20	74	7	55	51	0	0	48	1.00
25460--25495	19	1.9	19	88	5	56	55	13	5	25	1.60
25982--26043	29	2.1	30	82	8	74	56	14	11	17	1.67
26272--26329	29	1.9	29	82	6	71	56	1	1	39	1.19
31881--31969	29	3.0	28	75	12	81	46	1	12	40	1.49
35243--35501	140	1.9	140	85	3	369	38	14	14	32	1.87
36326--36363	19	2.0	19	94	0	67	44	10	0	44	1.38
36364--36388	13	1.9	13	100	0	50	36	16	8	40	1.77
36546--36605	20	3.0	20	68	15	52	30	21	13	35	1.92
36546--36625	40	2.0	40	85	0	106	30	20	15	35	1.93
36592--36725	20	6.7	20	80	2	117	35	20	13	29	1.91
36577--36728	60	2.5	60	80	2	171	34	21	13	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36908--36993	20	4.3	20	69	15	61	40	12	20	25	1.88
36896--36993	40	2.4	41	86	3	128	40	14	19	25	1.89
37117--37168	25	2.2	23	82	6	59	40	5	1	51	1.37
38606--38657	2	26.0	2	100	0	104	50	0	0	50	1.00
41290--41321	2	16.0	2	100	0	64	50	0	0	50	1.00
43065--43091	2	13.5	2	100	0	54	48	0	0	51	1.00
44188--44221	17	2.0	17	100	0	68	41	17	11	29	1.85
47342--47378	17	2.2	17	90	0	56	48	0	2	48	1.15
50594--50668	38	2.0	37	84	5	98	48	2	1	48	1.24
54001--54039	2	19.5	2	100	0	78	51	0	0	48	1.00
54196--54399	102	1.9	104	91	5	331	45	12	3	37	1.61
61559--61643	29	2.9	29	91	0	143	41	3	15	40	1.64
64905--64942	16	2.4	16	82	13	51	36	0	0	63	0.95
66313--66538	114	2.0	114	100	0	452	18	25	13	42	1.87
67596--67736	73	1.9	74	89	1	221	46	14	10	28	1.78
70722--70782	22	2.7	22	82	12	70	21	1	6	70	1.19
70722--70804	22	3.7	21	77	16	69	22	2	6	68	1.23
76761--77008	60	4.1	60	98	0	478	39	26	3	30	1.72
78245--78301	29	1.9	30	85	3	80	35	12	3	49	1.58
84435--84500	30	2.2	30	91	2	105	37	16	12	33	1.86
94249--94299	21	2.4	21	93	0	84	39	17	5	37	1.74
101890--101920	15	2.1	15	93	0	53	12	41	3	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103370--103396	5	5.4	5	100	0	54	0	22	55	22	1.44
104928--105226	121	2.5	118	83	5	330	29	18	7	44	1.77
107760--107996	45	5.3	45	86	4	266	30	23	10	35	1.88
107916--107987	22	3.2	22	64	11	56	33	25	5	36	1.79
107754--108032	90	3.1	89	77	9	296	29	23	10	36	1.87
107760--108012	135	1.9	134	85	3	346	30	22	10	36	1.87
107754--108032	45	6.2	45	84	4	262	29	23	10	36	1.87
110997--111072	38	2.0	39	84	7	102	35	11	2	50	1.53
112436--112482	22	2.2	22	84	3	60	48	2	14	34	1.56
117371--117410	21	2.0	21	90	5	64	60	15	7	17	1.57
119274--119312	20	1.9	21	89	5	62	64	0	0	35	0.94
119835--119975	44	3.2	44	81	2	140	28	19	24	27	1.98
123369--123393	13	1.9	13	100	0	50	56	4	32	8	1.47
123778--123931	41	3.8	40	77	10	132	31	20	17	31	1.95
123859--124017	41	3.8	41	74	15	146	30	22	16	31	1.95
125106--125141	13	2.6	14	86	8	56	36	5	0	58	1.22
130557--130651	41	2.3	41	80	3	102	33	21	14	30	1.93

Tables:   1

The End!