genome.fa.s5839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005839.1 Hibiscus syriacus cultivar Beakdansim tig00013691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55841

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4365--4504	14	9.2	14	66	22	70	46	0	2	50	1.21
4397--4461	30	2.2	30	88	5	96	55	1	0	43	1.09
4388--4504	14	7.5	15	73	17	96	46	0	2	50	1.21
4425--4795	54	7.1	47	90	7	341	39	0	10	50	1.36
4582--4792	32	7.5	32	69	28	185	36	0	11	52	1.39
4610--4652	22	2.0	22	100	0	86	34	0	13	51	1.42
4484--4809	54	6.1	54	95	2	581	36	0	11	52	1.38
4664--4706	22	2.0	22	100	0	86	34	0	13	51	1.42
4718--4760	22	2.0	22	95	0	77	34	0	11	53	1.37
4852--4916	22	3.0	22	95	4	114	35	1	12	50	1.49
4941--4998	30	1.9	31	89	3	91	43	10	8	37	1.70
7084--7156	37	2.0	37	97	0	137	46	19	12	21	1.82
13233--13286	22	2.4	22	81	9	65	22	31	20	25	1.98
23509--23557	3	16.3	3	82	0	62	38	0	0	61	0.96
23500--23557	15	4.1	15	80	13	68	39	0	0	60	0.97
25192--25233	20	2.2	19	86	4	57	33	0	2	64	1.07
25088--25324	120	2.0	117	83	4	298	37	8	8	46	1.63
25289--25345	29	2.0	29	86	6	80	47	1	0	50	1.11
25980--26203	112	2.0	112	92	1	369	39	16	10	32	1.84
31113--31220	22	5.0	22	82	6	116	41	22	23	12	1.88
31131--31265	21	6.3	21	87	4	132	42	22	18	16	1.89
31113--31241	64	2.0	64	80	8	147	41	22	21	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35126--35390	125	2.1	125	87	4	376	30	15	27	26	1.96
36521--36626	37	2.9	35	81	12	124	31	22	19	26	1.98
36928--37312	54	7.1	54	87	2	493	35	16	25	21	1.94
36915--37312	109	3.6	108	89	2	537	36	16	25	21	1.94
37298--37485	55	3.4	55	89	5	292	28	15	24	30	1.96
37463--37577	54	2.1	54	93	0	194	33	19	26	20	1.97
36915--37565	54	11.9	54	79	7	430	34	16	25	23	1.96
45907--45956	20	2.5	20	96	0	91	18	14	36	32	1.90
46581--46684	22	4.9	20	74	16	68	78	3	15	1	0.98
46605--46637	15	2.2	15	100	0	66	75	6	18	0	1.00
46581--46684	27	4.0	27	73	16	76	78	3	15	1	0.98
46635--46684	14	3.7	13	86	7	64	84	2	12	2	0.80
46603--46684	13	6.2	13	72	9	67	80	3	14	1	0.91
46599--46674	15	4.8	15	74	16	64	80	2	15	1	0.90
46643--46685	18	2.3	18	88	4	59	83	2	11	2	0.83
47729--48064	131	2.6	131	83	5	398	27	30	15	26	1.96
50644--50711	26	2.6	26	90	0	100	16	25	23	35	1.95
50720--50770	12	4.2	12	76	11	50	52	1	1	43	1.23
50950--51141	42	4.5	42	67	16	119	27	21	15	35	1.94
51999--52044	22	2.1	22	95	0	83	39	17	10	32	1.84
55539--55669	29	4.6	28	80	11	142	16	10	9	63	1.51
55539--55669	56	2.3	59	84	7	164	16	10	9	63	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55539--55684	29	5.1	28	77	9	100	16	10	9	63	1.50

Tables:   1

The End!