Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000584.1 Hibiscus syriacus cultivar Beakdansim tig00001140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80161

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2227--2374
67
2.2
65
81
9
156
45
10
6
37
1.64
2505--2545
14
3.0
14
85
3
57
48
0
2
48
1.14
4941--4988
23
2.1
23
96
0
87
31
14
12
41
1.83
5959--5995
13
2.9
13
84
15
51
35
0
2
62
1.10
7022--7108
29
3.0
29
98
1
167
31
35
6
26
1.83
10518--10555
20
1.9
20
100
0
76
36
10
28
23
1.88
10712--10787
39
2.0
37
82
7
91
47
3
1
47
1.29
16145--16300
64
2.4
65
77
8
158
32
21
19
26
1.97
17087--17304
103
2.1
103
92
0
364
26
12
23
37
1.91
17320--17372
23
2.3
23
90
0
79
20
24
26
28
1.99
17612--17660
21
2.3
21
96
3
89
53
0
10
36
1.35
22886--23103
103
2.1
103
96
0
400
25
13
23
37
1.92
23110--23187
23
3.3
23
87
1
102
24
16
23
35
1.95
27836--27890
20
2.8
20
97
0
101
27
21
29
21
1.99
35828--35892
16
3.8
17
73
13
62
61
3
1
33
1.21
35828--35902
26
2.9
26
76
7
73
58
2
1
37
1.20
44523--44573
22
2.3
23
80
13
61
52
23
0
23
1.47
45445--45498
21
2.6
21
82
5
56
51
1
5
40
1.36
47116--47169
22
2.5
21
79
8
54
51
5
7
35
1.53
47123--47172
22
2.2
22
85
3
64
48
6
6
40
1.52
51307--51372
27
2.5
27
97
2
125
16
18
18
46
1.84
52458--52650
97
2.0
97
93
0
332
26
18
16
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57646--57692
19
2.5
19
77
19
53
34
0
6
59
1.23
61716--61771
2
28.5
2
96
3
105
50
0
0
50
1.00
71633--71663
4
7.8
4
100
0
62
0
25
0
74
0.82
73358--73401
18
2.4
19
88
7
65
18
4
4
72
1.19
78356--78387
16
2.0
16
100
0
64
37
6
43
12
1.68

Tables:   1

The End!