Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005840.1 Hibiscus syriacus cultivar Beakdansim tig00013692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82286

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4367--4424
20
2.9
20
77
10
73
25
5
18
50
1.68
4501--4554
23
2.3
25
87
9
78
20
1
14
62
1.40
5829--5861
6
5.5
6
100
0
66
36
48
0
15
1.45
6487--6547
16
3.9
16
77
10
54
65
0
1
32
1.02
6571--6621
19
2.7
18
82
8
66
70
1
3
23
1.14
9073--9120
11
4.4
11
76
10
53
72
6
8
12
1.26
15399--15465
30
2.2
30
100
0
134
11
8
13
65
1.47
15753--15789
2
18.5
2
89
10
58
48
0
2
48
1.15
15842--15886
2
22.5
2
100
0
90
51
0
0
48
1.00
15904--16071
85
2.0
85
83
2
212
29
19
19
31
1.97
16043--16107
13
5.0
13
88
0
85
30
16
23
29
1.96
19348--19396
19
2.6
18
81
9
62
73
2
4
20
1.10
21624--21679
27
2.0
28
89
3
87
37
7
26
28
1.83
23364--23418
16
3.2
16
78
14
56
36
7
9
47
1.63
23365--23403
19
2.1
19
100
0
78
35
5
10
48
1.59
29252--29350
39
2.5
38
82
9
119
32
44
7
16
1.74
38744--38777
18
1.9
17
88
5
50
64
0
2
32
1.08
42790--42936
60
2.5
60
82
6
165
29
18
5
46
1.71
43086--43230
29
4.9
29
64
17
75
39
5
25
29
1.78
43090--43267
60
3.1
60
77
11
183
39
5
25
28
1.78
46412--46572
80
2.0
80
97
0
304
43
5
10
40
1.63
51570--52188
307
2.0
307
97
0
1168
34
20
17
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54795--54945
38
4.0
38
91
2
241
41
14
19
25
1.89
54797--54945
75
2.0
76
91
1
246
40
14
19
24
1.89
56615--56655
22
2.0
21
85
9
57
26
24
24
24
2.00
59234--59547
165
1.9
165
87
2
461
42
17
13
25
1.86
68943--68987
9
4.9
9
84
10
56
0
4
8
86
0.69
70802--70982
94
1.9
95
89
3
285
35
11
25
26
1.90
70787--71006
94
2.3
94
82
6
248
35
13
25
25
1.92
71390--72028
81
7.9
81
88
0
882
35
12
19
31
1.90
71996--72068
36
2.0
36
97
0
137
36
13
19
30
1.90
73829--73897
11
6.1
11
73
17
52
14
7
2
75
1.13
74067--74111
21
2.1
21
91
0
72
15
0
6
77
0.96
74069--74129
21
3.2
18
81
11
59
14
3
6
75
1.13
76309--76972
85
7.8
85
89
1
931
33
21
19
25
1.96
78815--78839
2
12.5
2
100
0
50
48
0
0
52
1.00
78979--79119
16
8.6
16
66
16
58
15
6
4
73
1.19
79064--79120
9
5.9
9
75
15
51
10
5
3
80
0.98

Tables:   1

The End!