genome.fa.s5841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005841.1 Hibiscus syriacus cultivar Beakdansim tig00013694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74899

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--65	31	2.1	31	85	2	85	10	24	18	46	1.81
147--221	20	3.8	20	83	5	98	44	18	25	12	1.84
205--261	14	3.7	14	75	20	60	43	22	24	8	1.81
159--277	33	3.4	33	82	11	132	45	21	23	9	1.81
278--391	33	3.5	33	95	1	203	9	24	21	43	1.82
273--389	14	7.1	17	69	24	81	10	24	22	42	1.84
2049--2421	92	4.1	93	94	4	656	21	12	19	46	1.83
2463--2589	18	7.3	19	71	20	91	44	29	17	8	1.78
2480--2589	18	6.4	18	71	25	96	45	29	18	7	1.76
2497--2589	32	2.9	31	88	7	132	45	29	18	7	1.76
2463--2589	51	2.5	51	74	14	136	44	29	17	8	1.78
2585--2703	19	6.6	19	79	12	126	11	19	24	44	1.84
4732--4829	18	5.5	18	84	11	123	43	17	23	15	1.87
4750--4845	18	5.8	17	74	22	80	41	17	26	14	1.88
4732--4846	50	2.2	52	90	4	180	42	17	25	14	1.87
4836--4951	52	2.3	51	93	1	196	16	21	18	43	1.87
4892--4983	33	2.8	33	98	1	175	13	23	18	44	1.85
4911--4965	14	3.6	14	73	21	56	10	23	20	45	1.82
5039--5133	19	5.4	19	81	18	125	45	17	22	14	1.85
5039--5152	50	2.2	51	93	6	196	43	18	23	14	1.86
8373--8602	20	11.5	20	85	2	248	19	18	25	36	1.94
8589--8671	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9257--9729	181	2.6	182	87	1	671	43	12	16	27	1.84
9650--9696	20	2.4	19	82	10	67	53	10	17	19	1.72
9659--9701	20	2.3	19	88	11	63	51	11	16	20	1.75
11834--11866	15	2.2	15	94	0	57	18	9	63	9	1.49
12005--12070	33	2.0	33	93	0	114	30	0	46	22	1.52
12275--12329	15	3.5	15	73	22	58	52	0	43	3	1.18
12258--12345	33	2.7	33	94	3	151	51	0	45	3	1.18
13904--13952	19	2.5	20	90	9	84	30	2	10	57	1.43
14187--15373	200	5.9	200	96	0	2205	36	14	18	30	1.91
18332--19171	182	4.6	182	93	1	1418	42	13	16	27	1.86
19307--19469	87	1.9	87	93	0	281	34	14	9	41	1.77
19391--19435	23	2.0	23	86	0	63	42	15	4	37	1.67
25645--25729	22	3.6	22	72	17	73	25	0	3	70	1.03
25680--25731	16	3.4	16	77	15	56	30	0	1	67	1.02
25840--25881	21	2.0	21	90	0	66	35	23	14	26	1.93
28609--28657	20	2.5	20	100	0	98	34	20	22	22	1.97
31337--31496	59	2.7	57	79	10	160	36	8	6	48	1.60
32772--32843	33	2.2	33	87	7	110	47	15	13	23	1.81
32796--32846	23	2.2	23	82	0	57	45	13	13	27	1.82
32810--32864	23	2.4	23	84	0	74	43	16	14	25	1.86
34301--34342	2	21.0	2	100	0	84	50	0	0	50	1.00
36812--36860	25	2.0	25	91	0	80	28	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37487--37538	20	2.6	20	96	0	95	25	28	13	32	1.93
43914--43967	24	2.2	24	86	0	72	33	24	22	20	1.97
58110--58179	34	2.1	34	97	0	131	38	14	18	28	1.90
61240--61281	21	2.0	21	95	0	75	26	28	21	23	1.99
61394--61469	20	4.1	19	78	18	81	17	28	32	21	1.95
63387--63424	3	13.0	3	86	5	51	0	28	2	68	1.03
64770--64811	21	2.0	21	95	0	75	26	28	21	23	1.99
64926--64982	15	3.5	15	72	25	53	19	24	36	19	1.94
64924--65011	34	2.5	36	90	5	144	18	26	37	18	1.93
64975--65016	22	1.9	22	90	9	68	16	28	38	16	1.91
66895--66934	17	2.4	17	91	4	64	42	2	17	37	1.63
67508--67644	68	2.0	68	94	0	238	37	21	17	24	1.94
73248--73277	4	7.5	4	100	0	60	76	0	0	23	0.78

Tables:   1

The End!