genome.fa.s5843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005843.1 Hibiscus syriacus cultivar Beakdansim tig00013709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86484

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1552--1661	45	2.3	46	84	6	141	39	21	10	29	1.86
9220--9246	13	2.1	13	100	0	54	37	14	25	22	1.93
22960--23079	42	2.9	42	97	0	222	16	20	18	44	1.87
23279--23325	14	3.4	14	73	8	51	44	0	0	55	0.99
23279--23426	28	5.2	28	71	20	92	46	0	1	51	1.14
23381--23438	27	2.3	26	78	18	68	46	1	1	50	1.22
23601--23670	20	3.5	20	96	0	131	35	14	10	40	1.79
23601--23679	40	2.0	40	89	0	122	35	15	8	40	1.78
23653--23734	15	5.5	15	85	2	112	35	18	7	39	1.78
23653--23734	30	2.8	30	92	1	130	35	18	7	39	1.78
30559--30634	21	3.7	21	74	10	84	39	23	17	19	1.92
30539--30714	20	8.7	20	76	9	133	32	24	18	24	1.97
30536--30689	41	3.8	41	88	2	177	33	24	17	24	1.96
31454--31507	24	2.2	24	90	0	81	22	16	20	40	1.91
31682--31706	12	2.1	12	100	0	50	72	0	28	0	0.86
34009--34063	19	2.8	20	83	2	67	40	21	20	18	1.92
34036--34129	33	2.8	33	86	0	134	46	18	23	11	1.81
34139--34170	14	2.3	15	84	15	50	6	18	25	50	1.70
34312--34348	14	2.6	14	91	0	65	45	21	0	32	1.52
36209--36610	94	4.3	94	95	0	682	47	18	12	22	1.82
36209--36610	187	2.1	187	93	1	689	47	18	12	22	1.82
38297--38376	20	4.1	19	88	6	115	48	17	23	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38372--38456	19	4.7	19	74	15	81	10	21	23	44	1.83
39003--39219	20	10.6	20	71	12	138	23	18	19	37	1.94
39003--39096	41	2.3	40	88	1	134	20	21	19	39	1.93
38977--39234	41	6.3	41	70	12	113	25	18	20	36	1.95
39005--39219	61	3.5	60	74	9	193	23	19	19	37	1.94
39168--39219	21	2.5	20	84	3	68	21	19	17	42	1.89
39207--39262	28	2.0	28	89	6	87	35	17	23	23	1.95
40537--40694	77	2.0	77	81	3	183	36	13	10	38	1.80
45561--45594	16	2.3	14	90	10	50	50	0	0	50	1.00
47016--47155	47	3.0	47	84	0	181	31	31	21	15	1.95
48739--48772	13	2.6	13	85	0	50	32	0	35	32	1.58
54927--54968	15	2.7	15	92	3	66	26	19	26	28	1.98
56629--56752	62	2.0	62	100	0	248	30	17	19	32	1.95
57083--57746	182	3.6	180	84	5	807	41	12	17	27	1.86
59084--59400	158	2.0	158	98	1	618	28	15	27	28	1.96
59725--59780	24	2.5	22	77	13	60	39	0	8	51	1.33
60422--60462	20	2.0	21	95	4	75	56	0	39	4	1.21
60764--60799	17	2.1	17	94	0	63	50	8	8	33	1.63
62334--62368	15	2.3	15	100	0	70	45	31	8	14	1.75
62334--62374	15	2.7	15	92	3	55	43	34	9	12	1.75
62349--63091	198	3.8	198	93	1	1267	37	15	16	30	1.89
63567--63618	15	3.5	15	94	0	86	17	48	1	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64758--64797	6	6.7	6	91	0	53	42	2	32	22	1.67
66725--66770	21	2.1	21	84	4	56	30	15	10	43	1.81
66230--67361	197	5.7	196	87	4	1430	38	15	13	31	1.87
70521--71043	198	2.6	195	80	6	575	38	14	15	31	1.88
71122--71195	23	3.2	23	92	0	121	36	17	8	37	1.80
72766--72793	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!