genome.fa.s5844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005844.1 Hibiscus syriacus cultivar Beakdansim tig00013712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151518

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4423--4499	33	2.4	32	89	4	127	44	15	9	31	1.78
4488--4529	21	2.0	21	95	0	75	47	7	14	30	1.71
12234--12363	40	3.4	39	65	28	100	30	17	18	33	1.94
12230--12371	73	2.0	72	86	5	182	33	18	17	30	1.94
14720--15502	391	2.0	391	97	0	1467	35	21	13	29	1.92
17644--17731	46	1.9	45	86	2	122	30	30	18	20	1.96
27181--27218	20	1.9	20	94	0	67	28	21	13	36	1.91
27776--27827	19	2.7	19	100	0	104	30	34	17	17	1.93
27711--27872	83	1.9	83	88	1	243	30	25	16	28	1.96
36533--36571	20	2.0	20	84	0	51	23	7	23	46	1.78
36731--36770	21	1.9	21	89	0	62	10	25	40	25	1.86
45235--45268	16	2.1	16	94	0	59	35	0	44	20	1.52
45598--45655	20	2.9	20	97	0	107	31	34	15	18	1.93
53141--53220	31	2.6	32	86	5	112	45	7	8	38	1.64
86746--86779	12	2.8	12	86	0	50	11	2	0	85	0.71
91690--91751	31	2.0	31	100	0	124	48	22	9	19	1.78
92428--92467	22	1.9	20	90	10	62	47	0	7	45	1.31
95156--95196	2	20.5	2	100	0	82	48	0	0	51	1.00
95700--95741	16	2.7	16	85	3	59	28	2	0	69	1.01
95708--95744	15	2.5	15	87	12	58	37	0	0	62	0.96
98572--98624	26	2.1	26	82	3	63	47	1	0	50	1.12
100260--100368	5	21.8	5	93	6	186	40	0	19	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100469--100506	19	2.0	20	89	5	60	34	10	18	36	1.85
100446--100522	22	3.5	22	80	7	75	40	10	11	37	1.76
101777--101807	16	1.9	16	93	0	53	32	19	16	32	1.94
104624--104712	23	3.8	24	77	12	96	19	24	25	30	1.98
105077--105101	12	2.1	12	100	0	50	52	0	16	32	1.44
105256--105323	22	3.1	22	86	0	100	19	23	30	26	1.98
105366--105414	25	2.0	25	95	0	89	20	16	28	34	1.94
107096--107153	21	2.8	21	84	10	66	18	18	24	37	1.94
107188--107265	41	1.9	41	84	5	104	23	14	24	38	1.91
107187--107256	20	3.5	19	78	16	70	22	14	25	37	1.92
117149--117217	23	3.1	22	87	8	95	27	20	26	26	1.99
122056--122080	12	2.1	12	100	0	50	24	16	44	16	1.86
122110--122244	29	4.5	29	71	7	99	25	34	23	17	1.96
122826--122875	23	2.2	23	89	7	75	30	0	14	56	1.39
122825--122917	44	2.2	41	81	12	109	31	0	12	55	1.37
125889--126703	60	14.9	59	77	18	705	41	0	11	46	1.42
125943--126337	49	7.6	49	85	11	431	41	0	12	46	1.41
126026--126119	21	4.6	20	70	16	61	40	0	10	48	1.38
126118--126707	48	12.2	48	74	16	458	41	0	11	46	1.42
126215--126243	10	2.9	10	100	0	58	41	0	20	37	1.53
126118--126707	151	3.7	151	79	16	615	41	0	11	46	1.42
126297--126390	21	4.6	21	68	23	74	41	0	9	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125889--126707	271	3.0	271	88	9	1202	41	0	11	46	1.42
126422--126470	24	2.0	24	84	7	64	38	0	16	44	1.48
126579--126669	24	3.8	23	68	13	67	40	0	12	47	1.41
125943--126708	331	2.4	318	85	10	1050	41	0	11	46	1.41
126853--127128	138	2.0	136	97	2	518	23	21	28	26	1.99
129027--129078	24	2.1	24	92	3	86	46	9	0	44	1.36
129515--129578	27	2.3	28	82	15	80	45	15	1	37	1.56
129659--129696	9	4.2	9	83	10	51	65	2	0	31	1.06
129868--129903	11	3.2	11	92	7	63	33	19	22	25	1.97
130000--130083	29	2.9	28	91	7	132	15	30	29	23	1.95
132508--132565	27	2.1	28	83	3	73	51	17	0	31	1.45
132827--132860	17	2.0	17	88	0	50	23	0	20	55	1.43
133719--133766	24	2.0	25	84	12	64	0	45	0	54	0.99
133719--133766	25	2.0	24	87	4	69	0	45	0	54	0.99
138349--138389	21	2.0	21	85	9	57	26	12	0	60	1.31
139283--139364	39	2.1	40	84	11	107	32	14	3	48	1.61
140629--141444	411	2.0	412	93	0	1382	41	14	16	27	1.87
151305--151360	2	28.5	2	96	3	105	50	0	0	50	1.00

Tables:   1

The End!