genome.fa.s5845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005845.1 Hibiscus syriacus cultivar Beakdansim tig00013716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110891

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8293--8334	21	2.0	21	90	0	66	30	11	7	50	1.66
8329--8431	33	3.2	33	86	2	147	33	6	14	45	1.71
12182--12208	13	2.1	13	100	0	54	22	25	14	37	1.93
26819--27203	51	7.2	50	75	14	276	31	15	23	29	1.95
26846--27225	55	7.0	51	77	15	301	30	15	22	30	1.95
26856--27207	163	2.2	162	85	5	471	31	15	23	29	1.96
38302--38355	21	2.6	21	74	11	56	35	12	7	44	1.71
38364--38453	47	1.9	47	88	2	137	41	10	17	31	1.83
39642--39712	20	3.5	20	98	0	133	30	23	19	25	1.98
40198--40323	19	6.8	19	79	12	145	11	21	19	46	1.82
42009--42191	93	2.0	89	88	6	269	22	12	18	46	1.82
42413--42492	42	1.9	42	84	0	106	21	38	17	22	1.93
43889--43924	14	2.6	14	95	0	63	30	0	25	44	1.54
44031--44077	19	2.5	19	96	0	85	44	21	21	12	1.85
44106--44233	33	3.9	32	86	10	186	14	22	19	42	1.88
44099--44232	67	2.0	66	95	1	241	16	22	19	41	1.90
45289--45333	20	2.2	20	88	0	63	37	26	17	17	1.93
45806--45911	20	5.2	20	79	6	88	25	17	24	32	1.97
45786--45923	61	2.3	61	81	5	170	24	16	23	35	1.95
45867--45920	20	2.7	20	94	0	90	25	16	24	33	1.96
47623--47693	36	2.0	35	83	2	88	26	30	18	23	1.97
47812--47852	21	1.9	22	90	5	66	29	26	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50318--50427	57	1.9	57	83	3	141	43	12	6	37	1.68
50858--50919	18	3.2	19	88	11	90	24	12	11	51	1.72
51165--51202	20	1.9	20	88	0	58	18	36	21	23	1.95
57125--57163	17	2.2	18	86	13	55	58	0	0	41	0.98
60165--60232	9	7.6	9	84	0	73	41	1	55	1	1.18
60181--60227	3	15.7	3	90	0	76	38	0	61	0	0.96
60187--60245	12	4.9	12	83	6	66	38	1	59	0	1.08
76709--76769	25	2.4	26	76	15	65	73	3	3	19	1.11
81019--81144	30	4.2	30	95	1	209	31	26	20	21	1.98
81136--81231	32	3.0	31	75	13	97	36	18	15	29	1.92
82064--82108	21	2.1	21	87	0	63	15	24	28	31	1.96
85864--85934	30	2.4	30	85	0	88	39	4	21	35	1.73
86143--86210	23	3.0	23	91	0	100	20	27	26	25	1.99
87887--87950	32	2.0	32	90	0	101	37	7	4	50	1.52
97394--97433	21	2.0	21	90	5	64	27	10	17	45	1.80
100179--100374	86	2.3	86	92	1	331	37	8	11	41	1.73
101363--101459	21	4.7	21	85	2	142	40	18	25	15	1.90
101448--101541	20	4.7	20	77	2	80	34	23	18	24	1.96
101445--101522	41	1.9	41	83	0	102	39	20	16	23	1.92
101346--101486	62	2.3	61	89	6	207	39	18	23	18	1.92
102037--102103	19	3.5	19	87	2	98	49	20	16	13	1.79
102099--102244	19	8.1	19	71	17	105	12	22	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102134--102219	33	2.6	33	92	1	136	11	24	25	38	1.89
102187--102244	20	2.9	20	80	10	64	13	24	18	43	1.87
104233--104354	41	3.0	41	80	3	120	22	36	18	22	1.95
104288--104354	21	3.2	21	66	6	55	23	35	20	19	1.95
105694--105743	14	3.6	14	97	0	91	32	0	26	42	1.56
105926--106048	33	3.8	32	82	8	167	16	22	17	43	1.88
105919--106048	66	2.0	66	95	0	233	17	22	17	42	1.89
108317--108341	12	2.1	12	100	0	50	0	28	0	72	0.86
108514--108567	24	2.2	24	90	0	81	38	20	16	24	1.92
109616--109672	19	2.9	20	86	5	80	36	21	22	19	1.95
109740--109776	19	1.9	19	100	0	74	13	21	16	48	1.80
109722--109786	33	2.0	32	90	3	103	13	21	18	46	1.84
109727--109757	14	2.2	14	100	0	62	12	22	19	45	1.84
109727--109803	33	2.4	33	84	4	95	14	22	20	42	1.88

Tables:   1

The End!