genome.fa.s5846.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005846.1 Hibiscus syriacus cultivar Beakdansim tig00013718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70816

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3408--3452	23	1.9	24	82	13	58	44	11	17	26	1.82
7049--7210	40	4.1	40	95	0	279	22	16	25	35	1.95
7287--7393	44	2.4	44	87	6	144	38	4	22	34	1.75
9079--9156	22	3.6	22	74	19	83	38	14	20	26	1.91
9080--9173	42	2.2	42	83	3	118	37	13	22	26	1.92
9576--9785	46	4.6	46	91	2	334	44	10	23	21	1.84
9600--9759	20	7.2	20	70	21	104	43	11	24	21	1.85
9609--9811	26	8.6	25	71	18	157	44	11	23	21	1.84
9656--9871	118	1.8	117	81	5	265	47	9	20	22	1.79
10834--10870	16	2.3	16	95	0	65	27	10	37	24	1.88
10834--10876	16	2.7	16	88	0	50	27	13	37	20	1.91
15793--15836	20	2.2	20	95	0	79	47	18	11	22	1.80
16443--16610	12	14.5	12	65	24	85	43	9	25	21	1.83
16465--16594	26	5.5	25	69	23	84	44	9	24	21	1.81
16431--16778	46	7.3	46	83	8	401	44	9	24	21	1.82
16593--16748	20	6.7	25	68	20	99	44	8	25	21	1.80
16445--16766	20	14.7	20	69	20	92	44	9	25	20	1.81
16443--16748	150	2.0	150	91	1	497	44	9	25	21	1.81
19285--19323	19	2.1	19	100	0	78	46	5	25	23	1.73
23272--23373	42	2.4	42	85	5	123	32	13	22	31	1.93
24486--24556	36	1.9	37	91	2	117	25	16	11	46	1.80
24481--24569	37	2.4	38	84	5	128	29	14	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24538--24685	45	3.3	43	75	9	127	22	18	16	42	1.89
24690--24847	45	3.5	45	77	8	151	23	13	20	41	1.88
25429--25746	134	2.4	134	87	1	467	29	18	20	31	1.96
35055--35120	14	4.7	14	71	0	51	24	18	28	28	1.98
45749--46252	54	9.4	54	74	10	349	34	21	13	31	1.92
45972--46077	51	2.1	51	82	7	126	29	20	14	35	1.92
46829--46874	23	2.0	24	86	4	67	4	21	4	69	1.24
46899--46947	20	2.4	21	86	6	66	4	18	0	77	0.92
47616--47666	24	2.1	24	85	7	68	5	19	0	74	1.02
47631--47698	22	3.2	21	75	18	61	4	22	0	73	1.01
47630--47698	14	4.9	14	75	13	61	4	21	0	73	1.00
54770--54803	16	2.1	16	89	10	52	61	0	5	32	1.20
59332--59383	26	2.1	23	82	10	59	36	9	3	50	1.54
59599--59738	54	2.7	52	83	5	174	32	18	15	34	1.92
69586--69626	22	1.9	21	90	5	64	21	0	14	63	1.30

Tables:   1

The End!