Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005847.1 Hibiscus syriacus cultivar Beakdansim tig00013722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100044

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1549--1639
44
2.0
48
82
8
118
49
9
0
40
1.36
1642--1746
38
2.8
38
85
2
133
49
12
0
38
1.41
1760--1799
21
1.9
21
100
0
80
57
15
0
27
1.38
1851--1884
17
1.9
18
94
5
61
61
2
0
35
1.11
10899--10947
23
2.2
22
96
3
89
28
8
34
28
1.86
12253--12300
22
2.2
22
92
0
78
27
22
27
22
1.99
12436--12462
8
3.4
8
100
0
54
11
0
25
62
1.28
20002--20048
15
3.1
15
84
0
58
14
17
59
8
1.59
20996--21036
16
2.6
16
88
3
57
36
12
21
29
1.90
22073--22119
19
2.4
21
75
17
55
63
0
6
29
1.19
22854--22896
20
2.3
19
84
11
61
27
27
4
39
1.76
22859--22896
20
1.9
20
94
0
67
28
26
5
39
1.78
26306--26445
36
3.9
36
90
0
217
27
17
13
41
1.87
27585--27655
20
3.5
20
96
0
124
21
18
28
32
1.96
32002--32068
31
2.3
30
84
7
84
40
26
11
20
1.88
34108--34133
2
13.0
2
100
0
52
50
0
0
50
1.00
35426--35471
19
2.4
19
92
0
74
8
45
15
30
1.76
35435--35484
19
2.7
19
87
3
66
10
44
18
28
1.81
35505--35554
22
2.2
23
89
7
75
18
24
18
40
1.91
35509--35568
22
2.8
21
77
7
66
18
23
16
41
1.90
35813--35964
47
3.3
44
76
15
116
42
1
9
47
1.44
40121--40170
23
2.2
22
79
6
64
24
26
26
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40130--40191
23
2.8
22
80
2
61
24
19
30
25
1.98
47624--47807
18
9.5
20
66
25
85
45
7
1
46
1.40
47725--47834
11
9.2
12
66
21
54
46
9
0
43
1.41
48351--48648
59
5.0
59
91
3
447
46
12
0
40
1.46
48322--48637
14
22.9
14
65
22
59
46
12
0
41
1.46
48436--48480
21
2.1
21
83
4
54
51
6
0
42
1.28
48495--48539
21
2.1
22
84
12
58
51
11
0
37
1.38
48780--48821
23
1.9
23
90
9
70
47
9
7
35
1.64
48967--49005
15
2.6
15
95
0
69
61
7
0
30
1.24
48990--49058
28
2.3
28
80
9
75
57
8
1
31
1.38
52038--52097
26
2.3
25
80
11
68
43
1
8
46
1.43
64913--64975
28
2.2
30
94
5
112
57
12
0
30
1.36
64917--64982
28
2.4
28
87
10
107
56
12
0
31
1.36
64952--65000
21
2.3
21
85
3
71
53
16
0
30
1.43
70660--70688
14
2.0
15
93
6
51
55
0
31
13
1.39
71248--71308
24
2.5
24
86
5
79
36
14
18
31
1.91
95744--95797
15
3.7
15
80
9
76
37
25
18
18
1.94
95737--95797
15
4.5
13
73
16
52
37
26
16
19
1.93
95737--95801
28
2.4
28
97
2
123
36
24
16
21
1.94

Tables:   1

The End!