Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005848.1 Hibiscus syriacus cultivar Beakdansim tig00013723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58786

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4662--4911
54
4.7
54
89
7
352
25
15
22
36
1.94
14818--15252
54
8.2
54
83
6
505
27
16
21
34
1.94
15033--15171
47
2.8
47
80
7
134
29
12
18
39
1.87
14818--15232
155
2.6
154
86
4
544
27
15
21
34
1.94
15566--15620
22
2.6
21
83
13
69
21
29
16
32
1.95
18199--18253
3
18.3
3
100
0
110
67
0
0
32
0.91
18359--18434
31
2.4
33
77
8
93
39
13
22
25
1.90
22138--22171
17
2.0
17
94
0
59
52
20
5
20
1.67
22979--23168
85
2.3
82
85
4
245
33
18
17
31
1.94
23028--23229
83
2.4
85
87
5
293
33
16
17
31
1.93
23247--23271
2
12.5
2
100
0
50
48
0
0
52
1.00
24556--24588
15
2.2
15
94
0
57
30
33
21
15
1.94
24673--24782
29
3.8
29
92
2
177
17
20
17
45
1.86
24701--24778
14
5.4
14
66
6
57
19
19
17
43
1.88
25246--25384
64
2.2
64
86
2
190
26
19
20
33
1.97
25326--25429
45
2.3
45
88
6
149
28
16
21
33
1.95
29615--29724
29
3.8
29
92
2
186
17
20
16
45
1.85
30185--30355
64
2.7
64
89
1
245
26
18
20
33
1.96
30185--30405
64
3.5
64
84
4
198
27
18
19
34
1.95
30943--30971
3
10.0
3
92
7
51
68
0
31
0
0.89
32348--32424
25
3.0
25
65
1
64
0
36
6
57
1.25
38956--39150
75
2.6
76
80
4
200
51
14
7
26
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41060--41111
22
2.4
22
87
9
79
50
11
13
25
1.75
42211--42286
36
2.1
36
85
7
100
47
1
3
47
1.29
42432--42469
20
1.9
20
88
0
58
18
23
13
44
1.85
47507--47578
35
2.1
35
94
0
126
16
13
23
45
1.83
50122--50156
2
17.5
2
100
0
70
48
0
0
51
1.00
53300--53424
64
1.9
65
90
4
200
28
20
20
30
1.98

Tables:   1

The End!