genome.fa.s5849.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005849.1 Hibiscus syriacus cultivar Beakdansim tig00013724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152547

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13309--13350	21	2.0	21	95	0	75	30	14	7	47	1.71
13339--13415	33	2.4	32	89	4	127	31	9	15	44	1.78
13571--13602	16	2.0	17	88	11	50	43	21	21	12	1.86
30077--30119	19	2.3	19	100	0	86	44	27	13	13	1.83
31362--31474	58	1.9	58	89	3	174	50	8	15	24	1.73
39514--39567	20	2.6	21	77	11	67	40	14	14	29	1.86
42199--42250	19	2.7	19	100	0	104	25	17	30	26	1.97
43347--43505	32	5.1	32	78	8	193	27	16	17	37	1.92
44100--44163	21	3.0	21	95	0	110	28	17	25	29	1.97
46760--46805	19	2.4	19	92	0	74	10	2	43	43	1.51
51222--51251	2	15.0	2	100	0	60	50	0	0	50	1.00
55083--55143	31	2.0	31	96	0	113	34	9	29	26	1.88
57445--57475	2	15.5	2	100	0	62	48	0	0	51	1.00
62764--62863	52	1.9	52	95	0	182	29	21	19	31	1.97
63132--63173	18	2.3	18	100	0	84	14	38	21	26	1.91
66524--66561	2	19.0	2	100	0	76	50	0	0	50	1.00
71431--71469	20	1.9	21	85	15	55	76	0	5	17	0.96
72505--72586	30	2.7	31	85	9	116	37	37	3	20	1.71
76465--76500	12	3.0	12	91	0	54	25	36	8	30	1.85
78355--78406	13	3.8	13	71	14	50	69	1	0	28	0.99
78351--78424	29	2.5	29	91	4	112	68	4	0	27	1.07
78353--78406	21	2.6	19	76	23	56	70	1	0	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81317--81404	34	2.6	34	83	7	108	20	1	13	64	1.34
85361--85498	68	2.0	69	90	9	221	40	14	25	19	1.89
85581--85628	23	2.1	23	88	0	69	35	12	18	33	1.89
86004--86055	23	2.3	22	90	6	77	44	19	1	34	1.62
86014--86076	23	2.7	23	90	0	90	38	19	6	36	1.77
86468--86554	39	2.2	39	95	0	156	17	13	20	48	1.81
86801--86838	18	2.1	18	90	0	58	52	10	5	31	1.58
86801--86846	24	1.9	24	90	0	74	47	15	4	32	1.65
87399--87470	23	3.2	23	88	4	101	38	20	5	34	1.76
87780--87818	20	2.0	20	89	0	60	48	10	15	25	1.76
87821--87892	23	3.1	23	87	2	90	40	20	5	33	1.76
87961--88206	123	2.0	122	99	0	483	33	14	12	39	1.84
89445--91939	193	12.9	196	91	6	4037	31	15	15	37	1.89
89445--91939	390	6.4	394	92	5	4122	31	15	15	37	1.89
89445--91925	194	12.8	186	89	7	3041	31	15	15	37	1.89
92058--92101	18	2.5	18	92	3	72	54	11	2	31	1.48
92197--92481	144	2.0	141	96	3	527	33	26	8	31	1.86
93963--94027	33	2.0	33	84	3	87	24	44	1	29	1.63
96483--96521	20	2.0	20	100	0	78	15	15	12	56	1.68
98603--98638	18	2.1	18	89	5	56	52	0	5	41	1.24
105258--105286	15	2.0	15	93	6	51	62	0	0	37	0.96
106048--106086	6	6.5	6	81	0	51	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106700--106757	23	2.5	23	85	0	89	37	10	10	41	1.73
116336--116377	20	2.1	20	95	0	75	38	21	7	33	1.81
116571--116642	28	2.5	28	84	8	83	37	2	8	51	1.47
116596--116652	28	2.0	28	86	6	80	36	5	10	47	1.61
117680--117828	20	7.3	20	69	6	111	19	17	24	38	1.93
117694--117854	21	7.8	21	74	4	166	21	16	26	36	1.94
117680--117849	41	4.1	41	94	2	297	20	17	25	37	1.94
118001--118049	6	8.2	6	93	0	80	36	46	14	2	1.56
118662--118714	22	2.4	22	87	0	88	35	28	18	16	1.93
118703--118777	21	3.6	21	76	3	89	34	28	16	21	1.94
118706--118783	41	1.9	41	91	0	129	35	26	16	20	1.94
118703--118787	21	4.1	21	73	3	82	36	28	15	20	1.92
129514--129579	18	3.7	18	87	0	105	28	28	22	19	1.98
130464--130504	21	1.9	22	85	5	57	24	24	2	48	1.63
130811--130844	2	17.0	2	100	0	68	50	0	0	50	1.00
131971--132015	23	2.0	22	86	4	63	42	20	0	37	1.52
135554--135582	13	2.2	13	100	0	58	27	37	24	10	1.88
137798--137876	21	3.8	20	73	17	72	32	18	16	31	1.94
137845--137907	29	2.2	29	100	0	126	34	17	12	34	1.88
139582--139622	18	2.3	18	86	0	55	75	0	0	24	0.80
140947--140977	3	10.3	3	100	0	62	64	0	0	35	0.94
143157--143209	21	2.5	22	77	17	60	20	24	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143216--143262	21	2.2	21	96	0	85	42	14	19	23	1.88
143260--143320	20	3.0	20	72	13	70	32	27	21	18	1.96
143313--143368	20	2.8	20	83	0	76	30	23	8	37	1.85
143561--143604	22	2.0	22	90	0	70	20	43	15	20	1.88
143867--143925	20	3.0	20	87	0	73	15	18	22	44	1.87
144062--144116	25	2.2	24	78	15	58	20	9	18	52	1.71
145244--145289	18	2.6	18	89	0	74	28	43	13	15	1.83
145822--145887	19	3.4	19	79	4	69	39	24	21	15	1.91
145876--145934	14	3.9	14	72	20	55	49	22	16	11	1.78
145860--145951	33	2.8	33	94	0	166	47	20	18	13	1.81
145860--145956	19	5.6	19	69	22	88	46	20	19	13	1.83
145963--146075	33	3.4	33	93	0	190	13	17	20	48	1.80
145984--146075	19	5.4	19	68	24	87	15	18	18	47	1.82
146060--146114	20	2.8	20	91	2	85	16	27	23	32	1.96
146485--146546	21	3.0	21	69	9	63	24	43	12	19	1.86
146477--146565	42	2.2	40	84	6	117	23	39	14	22	1.91
147974--148012	14	2.8	14	84	0	51	35	0	17	46	1.49
148139--148192	14	3.5	14	77	22	63	48	20	20	11	1.80
148216--148292	20	3.9	20	72	3	75	18	19	20	41	1.90
148490--148539	20	2.5	20	76	0	64	24	18	20	38	1.93
148566--148617	20	2.5	21	87	3	70	21	23	17	38	1.93
149613--149659	12	4.1	12	86	8	71	74	0	23	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151934--152042	32	3.4	32	85	8	159	41	20	24	13	1.89
152048--152118	19	3.7	19	86	3	99	11	18	21	49	1.78

Tables:   1

The End!