Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000585.1 Hibiscus syriacus cultivar Beakdansim tig00001141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75485

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2243--2387
19
8.1
19
76
16
148
44
20
23
11
1.84
2268--2332
33
2.0
33
93
0
112
41
23
24
10
1.86
2251--2387
52
2.6
52
92
1
220
43
21
23
11
1.85
2383--2449
19
3.5
18
78
11
71
8
16
25
49
1.74
2973--3100
20
6.3
20
84
5
141
25
17
25
32
1.96
2973--3121
81
1.8
81
81
2
183
24
18
24
33
1.97
3171--3211
21
2.0
21
85
0
55
34
31
17
17
1.93
3352--3381
16
1.9
15
93
6
51
50
20
3
26
1.64
3917--3947
15
2.0
16
93
6
55
58
0
0
41
0.98
4614--4648
2
17.5
2
100
0
70
48
0
0
51
1.00
6540--6588
20
2.5
20
96
0
89
24
14
46
14
1.81
7229--7270
20
2.1
20
90
0
66
14
26
40
19
1.89
7303--7343
19
2.2
20
86
8
59
7
24
36
31
1.83
30046--30195
64
2.4
64
95
1
266
33
14
31
20
1.93
34501--34575
28
2.7
27
76
10
71
50
1
2
45
1.24
34530--34569
12
3.2
12
85
3
53
55
0
0
45
0.99
34501--34569
14
5.1
14
75
15
56
50
1
2
44
1.25
34509--34575
14
4.9
14
74
15
59
52
1
1
44
1.19
36437--36612
87
2.0
87
100
0
352
34
13
19
32
1.90
42152--42189
6
6.3
6
100
0
76
47
18
0
34
1.49
42227--42268
13
3.0
14
79
10
50
64
2
7
26
1.32
43727--43852
65
2.0
64
84
7
166
31
21
16
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43729--43875
65
2.3
64
80
5
154
31
21
17
29
1.96
46369--46456
46
1.9
46
90
2
142
29
26
18
26
1.98
50671--50716
19
2.4
19
96
0
83
23
19
26
30
1.98
54308--54361
26
2.3
23
84
12
65
20
0
27
51
1.47
55042--55176
65
2.1
64
80
4
146
33
22
15
28
1.95
73393--73436
18
2.4
18
84
3
52
59
4
2
34
1.30
73500--73532
12
2.6
13
90
4
50
36
12
6
45
1.66

Tables:   1

The End!